Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L12
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07660.1 68418.m00877 structural maintenance of chromosomes (...    30   2.0  
At1g61190.1 68414.m06895 disease resistance protein (CC-NBS-LRR ...    29   2.6  
At1g30860.1 68414.m03774 expressed protein                             29   4.6  
At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    28   8.0  
At5g27710.1 68418.m03324 expressed protein                             28   8.0  
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein...    28   8.0  

>At5g07660.1 68418.m00877 structural maintenance of chromosomes
           (SMC) family protein similar to SMC-like protein (MIM)
           [Arabidopsis thaliana] GI:5880614; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1058

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 471 LKEEKVKKIHYKFEDGREMVEEYNVDTQ 554
           LK+ + +KI  + E+ RE+VE YN+D +
Sbjct: 129 LKDHQGRKISSRKEELRELVEHYNIDVE 156


>At1g61190.1 68414.m06895 disease resistance protein (CC-NBS-LRR
            class), putative domain signature CC-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 967

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -3

Query: 357  KSRSNKFFVSLFLIVN*LAVKVQCVILLFNNTKVFC*VLIVFILFHF 217
            K+++ +FF   F+ +  L V + C+I L ++T   C V+ +  +FHF
Sbjct: 899  KNQNPRFFFYCFIYL--LVVHLDCIIDLHSDTSGMCCVVHLDYVFHF 943


>At1g30860.1 68414.m03774 expressed protein
          Length = 730

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 390 RNIQSGTATMYKNTIWYHTLLDAEKSCLKEEKVKKIHYKFEDGR-EMVEEYNVDTQVLLR 566
           RN +   AT+ K        +D++K+CL+ ++ +++     DG+ E  EE N      L 
Sbjct: 353 RNRKIEEATLCKEEESVSGTVDSQKNCLQLQETREVEETCNDGKSEKKEEENTSPSEYLS 412

Query: 567 RAWKVK 584
           R  +++
Sbjct: 413 RESRLR 418


>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 456 AEKSCLKEEKVKKIHYKFEDGREMVEEYNVDTQ 554
           A  + LK+   KK+  K ++ RE+VE +N+D +
Sbjct: 123 ATATVLKDYLGKKVSNKRDELRELVEHFNIDVE 155


>At5g27710.1 68418.m03324 expressed protein 
          Length = 380

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 352 RLLSPVKITTKSIEISKVERLQCTKTPFG 438
           R L+P  I    +E S+ ++ Q T+TP+G
Sbjct: 140 RTLNPKMIPVPDVERSRKDKCQLTRTPYG 168


>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 535

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 348 IETFESCENYDKKHRNIQSGTATMYKNTI-WYHTLLDAEKSCLKEEKVKKIHYKFEDGRE 524
           IE+FE   +YD K         + Y   I  Y    DA K  LKE+++KK+  K  +  E
Sbjct: 131 IESFEL--DYDGKRDRWNGYDPSTYHRVIDLYEAKEDARKKYLKEQQLKKLEEK--NNNE 186

Query: 525 MVEEYNVD 548
             ++ N D
Sbjct: 187 KGDDANSD 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,794,980
Number of Sequences: 28952
Number of extensions: 279002
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)