Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L10
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   259   1e-71
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   6.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   6.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   6.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   6.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   6.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   6.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   6.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   6.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.1  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  259 bits (635), Expect = 1e-71
 Identities = 122/133 (91%), Positives = 127/133 (95%)
 Frame = +2

Query: 80  AIXPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 259
           AI PVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYGS
Sbjct: 2   AIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYGS 61

Query: 260 NKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRV 439
           NKKTRHMLP GFRKVLVHNVKELE+LMMQNRK+CAEIAHG SSKKRK IVERAQQLSIRV
Sbjct: 62  NKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRV 121

Query: 440 TNAAARLRSQENE 478
           T A+ARLRSQENE
Sbjct: 122 TYASARLRSQENE 134


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +2

Query: 233 LMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVE 412
           L   +  G   + +  +P+G+   +   + EL  L +  + +   + HG+    R LIV+
Sbjct: 66  LAAKVWNGQYARVQQSMPDGWETEISDQMLELRDLPISGKPFQIRMKHGLI---RDLIVD 122

Query: 413 R 415
           R
Sbjct: 123 R 123


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 346 KQEVLRRDRSWCLFEEAEAD 405
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 346 KQEVLRRDRSWCLFEEAEAD 405
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 346 KQEVLRRDRSWCLFEEAEAD 405
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 346 KQEVLRRDRSWCLFEEAEAD 405
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 346 KQEVLRRDRSWCLFEEAEAD 405
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 346 KQEVLRRDRSWCLFEEAEAD 405
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 346 KQEVLRRDRSWCLFEEAEAD 405
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 346 KQEVLRRDRSWCLFEEAEAD 405
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 499 LIIQLYLFILLGAEASGRI 443
           L +  +LF++   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 499 LIIQLYLFILLGAEASGRI 443
           L +  +LF++   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 499 LIIQLYLFILLGAEASGRI 443
           L +  +LF++   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,046
Number of Sequences: 438
Number of extensions: 2492
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)