Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_L06
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 166 3e-42
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 101 7e-23
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 86 4e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 70 4e-13
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 60 3e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 59 5e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 58 2e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 56 4e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 56 5e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 54 2e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 53 3e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 50 4e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 49 7e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 46 7e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 44 2e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 42 8e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 41 1e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 41 2e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 39 8e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.012
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 32 0.066
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.12
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.12
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.27
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 1.9
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 1.9
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 3.3
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.3
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 5.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.6
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 10.0
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 25 10.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 166 bits (403), Expect = 3e-42
Identities = 75/137 (54%), Positives = 96/137 (70%)
Frame = +1
Query: 265 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 444
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 445 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQ 624
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++ G+ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 625 PPIRRGDGPIAXVLAPT 675
P + GDGPI VLAPT
Sbjct: 188 PLLSPGDGPIVLVLAPT 204
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 101 bits (243), Expect = 7e-23
Identities = 46/133 (34%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Frame = +1
Query: 280 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 456
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 457 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIR 636
+ ++GY++PT IQAQ P SG+++ GV +TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 637 RGDGPIAXVLAPT 675
G+GPIA ++ PT
Sbjct: 488 TGEGPIAIIMTPT 500
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 86.2 bits (204), Expect = 4e-18
Identities = 39/103 (37%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Frame = +1
Query: 376 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXG 555
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 556 VXQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIAXVLAPT 675
+ +TGSGKT A+I+P I+ I+ PP+ + GP A VLAPT
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPT 334
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 69.7 bits (163), Expect = 4e-13
Identities = 32/87 (36%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Frame = +1
Query: 367 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 537
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 538 GKNLXGVXQTGSGKTLAYILPAIVHIN 618
G+++ G+ +TGSGKT+A+ +PA+ ++N
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLN 228
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 60.1 bits (139), Expect = 3e-10
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
F+E D + + + +G+K PTPIQ + P+ ++ +++ G+ QTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 613 I-NNQPPIRRGDGPIAXVLAPT 675
+ NN P A VLAPT
Sbjct: 108 LWNNPSPF------FAVVLAPT 123
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 59.3 bits (137), Expect = 5e-10
Identities = 27/72 (37%), Positives = 40/72 (55%)
Frame = +1
Query: 391 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTG 570
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L QTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 571 SGKTLAYILPAI 606
SGKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 57.6 bits (133), Expect = 2e-09
Identities = 29/81 (35%), Positives = 44/81 (54%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
F+ N +++ V G+K+ TP+QA P+ + K+L TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 613 INNQPPIRRGDGPIAXVLAPT 675
+ + G G A ++APT
Sbjct: 63 VTRRDTDETGLG--ALIVAPT 81
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 56.4 bits (130), Expect = 4e-09
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +1
Query: 403 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT 582
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+L +TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 583 LAYILPAIVHINNQPPIRRGD-GPIAXVLAPT 675
AY++P + + Q I G A +L PT
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPT 97
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 56.0 bits (129), Expect = 5e-09
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Frame = +1
Query: 361 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 540
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 541 KNLXGVXQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIAXVLAPT 675
+++ G +TGSGKTLA+++P I ++ P R G G I +++PT
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPT 170
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
F+ + + + G+K PTPIQ + P+ + G+++ G+ +TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 613 INN 621
+ +
Sbjct: 131 LKS 133
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 53.2 bits (122), Expect = 3e-08
Identities = 23/65 (35%), Positives = 40/65 (61%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
F+ N + +G+ +G++ PT IQ + P+A+ GK++ G TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 613 INNQP 627
+ +P
Sbjct: 321 LLYRP 325
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 49.6 bits (113), Expect = 4e-07
Identities = 19/64 (29%), Positives = 40/64 (62%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
FE+ + G+ G++ P+PIQ + PIA+SG+++ + G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 613 INNQ 624
++ +
Sbjct: 106 VDTK 109
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.8 bits (111), Expect = 7e-07
Identities = 31/103 (30%), Positives = 50/103 (48%)
Frame = +1
Query: 367 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 546
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 547 LXGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAXVLAPT 675
+ G +TGSGKTLA+I+P I ++ + DG A V++PT
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPT 120
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 45.6 bits (103), Expect = 7e-06
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Frame = +1
Query: 286 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 459
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 460 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIR 636
+ + +K E T IQ P S ++L TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 637 RGDGPIAXVLAPT 675
G A ++APT
Sbjct: 114 --GGYRAIIVAPT 124
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +1
Query: 424 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVXQTGSGKTLAYIL 597
++ FEE + +G+ +M +++P+ IQ + P+ +S +N+ G Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 598 PAIVHINNQPPIRRGDGPIAXVLAPT 675
+ ++ P P A LAP+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPS 193
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 41.9 bits (94), Expect = 8e-05
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
F + ++ +K + EPT IQ + G+N G +TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 613 INNQPPIRRGDGPIAXVLAPT 675
+ P G A +L PT
Sbjct: 69 WSKDP-----SGIFALILTPT 84
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +1
Query: 484 GYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
G+ +P PIQ+ P A G ++ G TGSGKTLA+ +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/84 (26%), Positives = 43/84 (51%)
Frame = +1
Query: 367 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 546
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 547 LXGVXQTGSGKTLAYILPAIVHIN 618
+ Q+G+GKT + + + I+
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSID 84
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 38.7 bits (86), Expect = 8e-04
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 481 MGYKEPTPIQAQGWPIAMS--GKNLXGVXQTGSGKTLAYILPAIVHINNQPP--IRRGDG 648
M PT IQ+ P ++ K+ QTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 649 PIAXVLAPT 675
A ++APT
Sbjct: 217 IYAVIMAPT 225
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 34.7 bits (76), Expect = 0.012
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +1
Query: 400 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLXGVXQTGSG 576
S ++ P + E A+ + + G+++ TP+Q + + + +N +TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 577 KTLAYILPAIVHINNQPPIRRGDGPIAXVLAPT 675
KTLA++L A + P + +L+PT
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPT 121
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 32.3 bits (70), Expect = 0.066
Identities = 14/65 (21%), Positives = 33/65 (50%)
Frame = +1
Query: 424 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPA 603
I F++ N + +G+ G++ P+ IQ + + +++ Q+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 604 IVHIN 618
+ I+
Sbjct: 78 LQKID 82
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 544 NLXGVXQTGSGKTLAYILPAIVHINNQPP 630
NL V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 544 NLXGVXQTGSGKTLAYILPAIVHINNQPP 630
NL V TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 532 MSGKNLXGVXQTGSGKTLAYILPAIV 609
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 27.5 bits (58), Expect = 1.9
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +1
Query: 391 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTG 570
V V VE PI Y GV +GY + P G P+ ++GK + V
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308
Query: 571 SGKTLAYILPAIVHINNQPPIRRGD 645
GK +L + + + P ++RGD
Sbjct: 309 -GKVCMDML--AIDVTDVPDVKRGD 330
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 523 PIAMSGKNLXGVXQTGSGKTLAYILPAI 606
P+ G ++ TGSGKTL+Y++P +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 495 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 370
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 3.3
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Frame = -2
Query: 531 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILFDFIW* 352
+Y L +G H L ++ + F K ++ + + SY++ + + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 351 SFENCRMWIIKVFVERLE*NRIPIWAS----HVLPSREFFFPTKASRSSKSIATVAKPRR 184
+ F L+ NR+ I AS H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 183 IIAEFVASSKFGTTVSTAII 124
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 355 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 486
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 355 PYEVEEYRNKHEVTVS 402
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 330 WIIKVFVERLE*NRIPIWASHVLPSREF 247
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 484 PLSLHLVAHNQENL--LLQSIE 425
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 177 AEFVASSKFGTT-VSTAIIPITRHDYF 100
A F SS F T V+ ++IPI R+DY+
Sbjct: 448 AFFTVSSLFFTRFVNESLIPILRNDYY 474
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/41 (24%), Positives = 17/41 (41%)
Frame = -1
Query: 184 NYRRICCLLQIWNHRFHGYYSNYQT*LFFGFS*RCXFKLWM 62
NY I C L +WN Y +F + +++W+
Sbjct: 180 NYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,335
Number of Sequences: 5004
Number of extensions: 54763
Number of successful extensions: 175
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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