Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_L06
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 163 7e-41
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 148 4e-36
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 148 4e-36
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 128 3e-30
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 123 1e-28
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 122 2e-28
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 102 3e-22
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 102 3e-22
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 102 3e-22
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 95 3e-20
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 92 4e-19
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 84 9e-17
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 79 2e-15
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 73 2e-13
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 67 9e-12
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 67 9e-12
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 67 1e-11
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 66 2e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 64 6e-11
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 62 3e-10
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 60 1e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 60 1e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 60 1e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 60 1e-09
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 58 7e-09
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 58 7e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 55 5e-08
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 54 9e-08
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 51 6e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 51 8e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 50 1e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 50 1e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 49 2e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 49 3e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 48 4e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 46 2e-05
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 46 2e-05
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 46 2e-05
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 45 5e-05
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 45 5e-05
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 45 5e-05
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 44 7e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 44 1e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 43 2e-04
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 43 2e-04
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 43 2e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 42 4e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 42 4e-04
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 41 7e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 41 7e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 40 0.001
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 37 0.014
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 37 0.014
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 36 0.025
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 34 0.100
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 33 0.17
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 32 0.40
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 32 0.40
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 31 0.93
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 0.93
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 30 1.2
At3g42725.1 68416.m04461 expressed protein 30 1.2
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 30 1.2
At2g25460.1 68415.m03049 expressed protein 30 1.2
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 29 3.8
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 3.8
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.0
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.0
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 28 6.6
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 28 6.6
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 6.6
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 6.6
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 6.6
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 8.7
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 27 8.7
At1g13810.1 68414.m01621 expressed protein ; expression supporte... 27 8.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 163 bits (397), Expect = 7e-41
Identities = 74/138 (53%), Positives = 96/138 (69%)
Frame = +1
Query: 262 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEE 441
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 442 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINN 621
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L G+ +TGSGKTL+Y+LPAIVH+N
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA 163
Query: 622 QPPIRRGDGPIAXVLAPT 675
QP + GDGPI VLAPT
Sbjct: 164 QPMLAHGDGPIVLVLAPT 181
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 148 bits (358), Expect = 4e-36
Identities = 62/127 (48%), Positives = 92/127 (72%)
Frame = +1
Query: 295 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 474
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 475 KTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 654
+G+ EPTPIQAQGWP+A+ G++L G+ +TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 655 AXVLAPT 675
+LAPT
Sbjct: 241 VLILAPT 247
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 148 bits (358), Expect = 4e-36
Identities = 62/127 (48%), Positives = 92/127 (72%)
Frame = +1
Query: 295 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 474
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 475 KTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 654
+G+ EPTPIQAQGWP+A+ G++L G+ +TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 655 AXVLAPT 675
+LAPT
Sbjct: 241 VLILAPT 247
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 128 bits (309), Expect = 3e-30
Identities = 53/132 (40%), Positives = 84/132 (63%)
Frame = +1
Query: 280 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 459
D S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 460 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRR 639
+ +K Y++PT IQ Q PI +SG+++ G+ +TGSGKT A++LP IVHI +QP ++R
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR 298
Query: 640 GDGPIAXVLAPT 675
+GPI + APT
Sbjct: 299 DEGPIGVICAPT 310
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 123 bits (296), Expect = 1e-28
Identities = 55/132 (41%), Positives = 80/132 (60%)
Frame = +1
Query: 280 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 459
D + +PF KNFY + + + V YR + E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 460 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRR 639
+ +K + Y++P PIQAQ PI MSG++ GV +TGSGKTL ++LP + HI +QPP+
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 466
Query: 640 GDGPIAXVLAPT 675
GDGPI V+APT
Sbjct: 467 GDGPIGLVMAPT 478
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 122 bits (295), Expect = 2e-28
Identities = 54/132 (40%), Positives = 80/132 (60%)
Frame = +1
Query: 280 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 459
D + +PF KNFY + + + EV YR + E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 460 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRR 639
+ +K + Y++P PIQ Q PI MSG++ GV +TGSGKTL ++LP + HI +QPP+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 599
Query: 640 GDGPIAXVLAPT 675
GDGPI V+APT
Sbjct: 600 GDGPIGLVMAPT 611
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 102 bits (244), Expect = 3e-22
Identities = 49/116 (42%), Positives = 68/116 (58%)
Frame = +1
Query: 328 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 507
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 508 QAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAXVLAPT 675
QAQ WPIAM G+++ + +TGSGKTL Y++P +H+ R GP VL+PT
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPT 239
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 102 bits (244), Expect = 3e-22
Identities = 49/116 (42%), Positives = 68/116 (58%)
Frame = +1
Query: 328 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 507
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 508 QAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAXVLAPT 675
QAQ WPIAM G+++ + +TGSGKTL Y++P +H+ R GP VL+PT
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPT 239
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 102 bits (244), Expect = 3e-22
Identities = 49/116 (42%), Positives = 68/116 (58%)
Frame = +1
Query: 328 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 507
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 508 QAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAXVLAPT 675
QAQ WPIAM G+++ + +TGSGKTL Y++P +H+ R GP VL+PT
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPT 239
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 95.5 bits (227), Expect = 3e-20
Identities = 49/126 (38%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
Frame = +1
Query: 310 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 477
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 478 TMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 657
+ G+ PTPIQAQ WPIA+ +++ + +TGSGKTL Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 658 XVLAPT 675
+LAPT
Sbjct: 511 LILAPT 516
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 91.9 bits (218), Expect = 4e-19
Identities = 45/122 (36%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Frame = +1
Query: 319 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 498
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 499 TPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIAXVLA 669
TPIQ QG P+ +SG+++ G+ TGSGKTL ++LP I+ + PI G+GPIA V+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 670 PT 675
P+
Sbjct: 181 PS 182
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 83.8 bits (198), Expect = 9e-17
Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Frame = +1
Query: 322 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 501
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 502 PIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIAXVLAP 672
PIQ QG P+ ++G+++ G+ TGSGKTL ++LP I+ + PI G+GPI ++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 673 T 675
+
Sbjct: 231 S 231
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Frame = +1
Query: 373 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLX 552
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + +++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 553 GVXQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIAXVLAPT 675
G+ +TGSGKT A++LP + +I+ PP+ +GP A V+APT
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPT 398
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 72.5 bits (170), Expect = 2e-13
Identities = 43/111 (38%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Frame = +1
Query: 361 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 534
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 535 SGKNLXGVXQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIAXVLAPT 675
G++L G+ +TGSGKTLA+ +PAI+H+ I G P VL+PT
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPT 200
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 67.3 bits (157), Expect = 9e-12
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Frame = +1
Query: 352 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 525
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 526 IAMSGKNLXGVXQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIAXVLAPT 675
A++GK+L TGSGKT ++++P I +++ P + P+A VLAPT
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPT 195
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 67.3 bits (157), Expect = 9e-12
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Frame = +1
Query: 265 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYF 435
N R WD + PF + +P P ++ + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 436 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHI 615
E + + + ++ Y +PTP+Q PI + G++L QTGSGKT A+ P I I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGI 221
Query: 616 NNQPPIRRGDG-----PIAXVLAPT 675
++R G P+A +L+PT
Sbjct: 222 MKDQHVQRPRGSRTVYPLAVILSPT 246
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/68 (44%), Positives = 43/68 (63%)
Frame = +1
Query: 472 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGP 651
V + G+ P+PIQAQ WPIAM +++ + +TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGP 302
Query: 652 IAXVLAPT 675
VL+PT
Sbjct: 303 TILVLSPT 310
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 367 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 456
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 66.1 bits (154), Expect = 2e-11
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Frame = +1
Query: 265 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 435
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 436 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHI 615
E + + + ++ Y +PTP+Q PI +G++L QTGSGKT A+ P I I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 616 NNQPPIRRGDG-----PIAXVLAPT 675
I R G P+A +L+PT
Sbjct: 209 MKDQHIERPRGVRGVYPLAVILSPT 233
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 64.5 bits (150), Expect = 6e-11
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Frame = +1
Query: 376 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 543
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 544 NLXGVXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAXVLAP 672
TGSGKT A+I P ++ + DG A +L+P
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSP 218
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 62.1 bits (144), Expect = 3e-10
Identities = 36/94 (38%), Positives = 52/94 (55%)
Frame = +1
Query: 394 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGS 573
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 574 GKTLAYILPAIVHINNQPPIRRGDGPIAXVLAPT 675
GKT A+ LP + + +P +R +L PT
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPT 247
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 60.5 bits (140), Expect = 1e-09
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Frame = +1
Query: 265 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 435
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 436 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHI 615
+ + D + ++ Y PTP+Q PI ++ ++L QTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 616 NNQPPIRRGDG-----PIAXVLAPT 675
+ R G P A +L+PT
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPT 238
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 60.5 bits (140), Expect = 1e-09
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Frame = +1
Query: 265 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 435
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 436 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHI 615
+ + D + ++ Y PTP+Q PI ++ ++L QTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 616 NNQPPIRRGDG-----PIAXVLAPT 675
+ R G P A +L+PT
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPT 238
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +1
Query: 481 MGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 657
MG++ PT +QAQ P+ +SG+++ TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 658 XVLAPT 675
V+ PT
Sbjct: 108 LVIVPT 113
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
FE N V +K GYK PTPIQ + P+ +SG ++ + +TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 613 INNQPPIRRGDGPIAXVLAPT 675
+ P +G G A +L+PT
Sbjct: 90 LKQHVP--QG-GVRALILSPT 107
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 57.6 bits (133), Expect = 7e-09
Identities = 31/102 (30%), Positives = 52/102 (50%)
Frame = +1
Query: 301 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 480
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 481 MGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 606
MG+ T IQA+ P M G+++ G +TGSGKTLA+++PA+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 57.6 bits (133), Expect = 7e-09
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Frame = +1
Query: 361 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 540
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 541 KNLXGVXQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIAXVLAPT 675
K++ +TGSGKTLAY+LP + + + + ++ P A +L P+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPS 129
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 54.8 bits (126), Expect = 5e-08
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Frame = +1
Query: 409 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLA 588
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK++ G+ QTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 589 YILPAIVHI-----NNQPPIRRGDGP--IAXVLAPT 675
+ +P + + +++P R P A VL+PT
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPT 98
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 54.0 bits (124), Expect = 9e-08
Identities = 29/81 (35%), Positives = 46/81 (56%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
FE ++ + K +G ++PTP+Q P ++G+++ G+ QTGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 613 INNQPPIRRGDGPIAXVLAPT 675
+ P G A V+ PT
Sbjct: 119 RLAEDPY----GVFALVVTPT 135
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/84 (28%), Positives = 48/84 (57%)
Frame = +1
Query: 424 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPA 603
++ F + D ++G+K Y + T +Q+ P A+ G+++ G +TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 604 IVHINNQPPIRRGDGPIAXVLAPT 675
+ ++ + DG +++PT
Sbjct: 130 LEKLHRE-RWSPEDGVGCIIISPT 152
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 50.8 bits (116), Expect = 8e-07
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Frame = +1
Query: 352 SPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 531
S E ++ K ++ V VEV NP + +++ +K G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 532 MSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIAXVLAPT 675
+ G +L G +TG GKTLA++LP + + N P + G P VL PT
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPT 183
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Frame = +1
Query: 364 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 543
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 544 NLXGVXQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIAXVLAPT 675
++ G +TGSGKTLA+++PA+ + + R G G I V+ PT
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVI--VICPT 170
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
F++ +G++ G+K T +Q P+ + GK++ +TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 613 INNQPPIRRGDGP---IAXVLAPT 675
+ PP R + I V+ PT
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPT 165
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +1
Query: 466 QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRRGD 645
+ +K G++ T +Q PI + GK++ +TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 646 GP---IAXVLAPT 675
I V+ PT
Sbjct: 455 RQPPIIVLVVCPT 467
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
FEE PD + ++ G+ PT +Q+ P + G + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 613 I 615
I
Sbjct: 172 I 172
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +1
Query: 466 QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQPPIRRGD 645
+ +K GY+ T +Q PI + GK++ +TG+GKT+A++LP+I + PP +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 646 --GPI-AXVLAPT 675
PI A V+ PT
Sbjct: 127 KRPPILALVICPT 139
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +1
Query: 424 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPA 603
++ F+E + V ++ + + PT IQ G P M K++ TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 604 I 606
+
Sbjct: 171 V 171
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
FE+ + G+ G++ P+PIQ + PIA++G+++ + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 613 IN 618
I+
Sbjct: 193 ID 194
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
FE+ + G+ G++ P+PIQ + PIA++G+++ + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 613 IN 618
I+
Sbjct: 193 ID 194
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/62 (30%), Positives = 38/62 (61%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
FE+ + +G+ G+++P+PIQ + PIA++G ++ + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 613 IN 618
I+
Sbjct: 186 ID 187
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/62 (30%), Positives = 38/62 (61%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
FE+ + +G+ G+++P+PIQ + PIA++G ++ + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 613 IN 618
I+
Sbjct: 186 ID 187
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/62 (30%), Positives = 38/62 (61%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
FE+ + +G+ G+++P+PIQ + PIA++G ++ + G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 613 IN 618
I+
Sbjct: 216 ID 217
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +1
Query: 460 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH-INNQPPIR 636
+ + + + G ++ PIQ AM G+++ G +TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 637 RGDGPIAXVLAPT 675
RG P+ VLAPT
Sbjct: 175 RGRNPLCLVLAPT 187
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
F E + + + +K + P IQA + + GK+ Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 613 INNQ 624
+ +
Sbjct: 436 LREE 439
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +1
Query: 451 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQ 624
P+++ ++ +G+ PT IQ + P +G++ QTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ 141
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 460 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH-INNQPPIR 636
+ + +K G ++ PIQ AM G+++ G +TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 637 RGDGPIAXVLAPT 675
RG P VLAPT
Sbjct: 187 RGKNPQCLVLAPT 199
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +1
Query: 421 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT--LAYI 594
PI+ F++ D V +GV GYK+P+ IQ + + G+++ Q+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 595 LPAIVHINNQ 624
+ IV+I+++
Sbjct: 80 VCQIVNISSR 89
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 460 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLXGVXQTGSGKTLAYILPAI 606
+ + + + +KEPT IQ + +A GK++ G +TGSGKTLA+ LP +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +1
Query: 514 QGWPIAMSGKNLXGVXQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIAXVLAPT 675
Q P A++GK+L TGSGKT ++++P I +++ P + P+A VLAPT
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPT 58
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +1
Query: 484 GYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHI---NNQPP 630
G++ TP+QA+ P S K++ TGSGKTLA++LP I I N+ PP
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +1
Query: 484 GYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHI---NNQPP 630
G++ TP+QA+ P S K++ TGSGKTLA++LP I I N+ PP
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 454 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINN 621
D V ++ G+ P+ QA P +SGK++ +TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +1
Query: 445 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVHINNQ 624
+ P +++ ++ G PIQ A+ G+++ +TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 625 ----PPIRR-GDGPIAXVLAPT 675
RR G P VLAPT
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPT 189
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +1
Query: 394 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGS 573
T G+E PI F + + V +GV G+++P+ IQ + + G+++ Q+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 574 GKT 582
GKT
Sbjct: 84 GKT 86
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 499 TPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 606
TP+QA P+ S K++ TGSGKTLA+++P +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 33.9 bits (74), Expect = 0.100
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +1
Query: 433 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIVH 612
F+E+ + + G + T +Q + GK+ +TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 613 INNQPPIRRGDGPIAXVLA 669
+ +G +A + A
Sbjct: 390 VLKAMNSGKGVNKVAPIFA 408
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Frame = +1
Query: 310 NKNFYDPH---PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 471
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 472 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAI 606
+ G + T +Q + GK+ +TG+GK++A++LPAI
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 460 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLXGVXQTGSGKTLAYILPAIVHINNQP 627
+++ ++ MG P+Q W I G +++ TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 628 PIR 636
P+R
Sbjct: 91 PVR 93
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.9 bits (69), Expect = 0.40
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = +1
Query: 382 KHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVX 561
K V +S + P Y E D + G K P+Q Q +M K+ +
Sbjct: 170 KPSVQISNKDHETP-SYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLM 228
Query: 562 QTGSGKTLAYILPA 603
TG GK+L Y LPA
Sbjct: 229 PTGGGKSLCYQLPA 242
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 409 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLA 588
EVH + F+ + + +G+ G+++P+ IQ +G G ++ Q+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 589 Y 591
+
Sbjct: 93 F 93
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 475 KTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIV 609
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 463 QQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 600
+ +K +G QA+ A++GKN+ T SGK+L Y +P
Sbjct: 383 KSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At3g42725.1 68416.m04461 expressed protein
Length = 202
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +2
Query: 188 LGLATVAIDLEDLEALVGKKNSLEGRTCDAQIGILFHSNLSTKTFMIHILQFSKDHHMKS 367
LGLA +A+ L L + G +S + R+C I H + T F+ ++ FS++ +S
Sbjct: 44 LGLAFLAVSLVSLISSFGSASSHQSRSCFI-ARITLHVSSLTGQFIAVLMLFSRE--KQS 100
Query: 368 KSIEINTR 391
S+ I+TR
Sbjct: 101 LSLLISTR 108
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +1
Query: 367 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 546
E + E S +VH + F+ + + +G+ G+++P+ IQ +G G +
Sbjct: 22 EVLEGQDEFFTSYDDVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD 78
Query: 547 LXGVXQTGSGKTLAY 591
+ Q+G+GKT +
Sbjct: 79 VIQQAQSGTGKTATF 93
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 241 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 125
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 451 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAY 591
PD ++ G+ G+++P+ IQ +G G ++ Q+G+GKT +
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF 95
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 484 GYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPAIV 609
GY Q Q + + G + V TG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 313 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 468
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 313 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 468
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 265 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQY 432
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 433 FEE 441
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 265 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQY 432
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 433 FEE 441
EE
Sbjct: 811 NEE 813
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 322 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 498
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 499 TPIQAQGWPIAMS 537
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 322 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 498
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 499 TPIQAQGWPIAMS 537
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 322 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 498
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 499 TPIQAQGWPIAMS 537
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 122 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 268
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -2
Query: 282 IWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPITRH- 109
+W VL + F F K R ++S A R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 108 -DYFSDLVEDVXLNYGCXLTQGPP 40
YF + E + Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At1g13810.1 68414.m01621 expressed protein ; expression supported
by MPSS
Length = 303
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 336 RMWIIKVFVERLE*NRIPIWASHVLPSREFF 244
R+W F E ++ W +HVLP+RE +
Sbjct: 222 RVWRDTAFWEDMKPALFDFWQNHVLPAREIY 252
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,875,076
Number of Sequences: 28952
Number of extensions: 281078
Number of successful extensions: 819
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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