Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L04
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P20227 Cluster: TATA-box-binding protein; n=7; Eukaryot...    56   8e-07
UniRef50_Q91YM5 Cluster: TATA-box-binding protein; n=15; Coeloma...    49   1e-04
UniRef50_P29037 Cluster: TATA-box-binding protein; n=168; Eukary...    49   1e-04
UniRef50_P20226 Cluster: TATA-box-binding protein; n=13; Bilater...    49   1e-04
UniRef50_A2Z7N4 Cluster: TATA-box-binding protein; n=1; Oryza sa...    36   1.2  
UniRef50_Q6BIC6 Cluster: Similarities with CA2369|CaTBP1 Candida...    35   2.2  
UniRef50_UPI0000D57506 Cluster: PREDICTED: similar to CG2990-PB,...    34   3.8  
UniRef50_Q4UMX8 Cluster: Valyl-tRNA synthetase; n=1; Rickettsia ...    34   3.8  
UniRef50_A7SEE3 Cluster: Predicted protein; n=2; Nematostella ve...    33   5.0  
UniRef50_Q4N3Z0 Cluster: Cation-transporting ATPase; n=1; Theile...    33   6.6  
UniRef50_Q92GR9 Cluster: Valyl-tRNA synthetase; n=18; Rickettsia...    33   8.7  

>UniRef50_P20227 Cluster: TATA-box-binding protein; n=7;
           Eukaryota|Rep: TATA-box-binding protein - Drosophila
           melanogaster (Fruit fly)
          Length = 353

 Score = 56.0 bits (129), Expect = 8e-07
 Identities = 26/31 (83%), Positives = 27/31 (87%)
 Frame = +3

Query: 597 PMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
           PMTP TP SADP I+PQLQNIVSTVNL CKL
Sbjct: 162 PMTPATPGSADPGIVPQLQNIVSTVNLCCKL 192



 Score = 35.5 bits (78), Expect = 1.2
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +3

Query: 249 MDHMLPSPYNIPGIGTPLHQPEED 320
           MD ML   ++IP IGTPLHQ E D
Sbjct: 1   MDQMLSPNFSIPSIGTPLHQMEAD 24


>UniRef50_Q91YM5 Cluster: TATA-box-binding protein; n=15;
           Coelomata|Rep: TATA-box-binding protein - Mus musculus
           (Mouse)
          Length = 260

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +3

Query: 597 PMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
           P+TP TP S    I+PQLQNIVSTVNL CKL
Sbjct: 125 PITPATPASESSGIVPQLQNIVSTVNLGCKL 155


>UniRef50_P29037 Cluster: TATA-box-binding protein; n=168;
           Eukaryota|Rep: TATA-box-binding protein - Mus musculus
           (Mouse)
          Length = 316

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +3

Query: 597 PMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
           P+TP TP S    I+PQLQNIVSTVNL CKL
Sbjct: 125 PITPATPASESSGIVPQLQNIVSTVNLGCKL 155


>UniRef50_P20226 Cluster: TATA-box-binding protein; n=13;
           Bilateria|Rep: TATA-box-binding protein - Homo sapiens
           (Human)
          Length = 339

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +3

Query: 597 PMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
           P+TP TP S    I+PQLQNIVSTVNL CKL
Sbjct: 148 PITPATPASESSGIVPQLQNIVSTVNLGCKL 178


>UniRef50_A2Z7N4 Cluster: TATA-box-binding protein; n=1; Oryza
           sativa (indica cultivar-group)|Rep: TATA-box-binding
           protein - Oryza sativa subsp. indica (Rice)
          Length = 264

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +3

Query: 636 ILPQLQNIVSTVNLDCKL 689
           I+P LQNIVSTVNLDC+L
Sbjct: 45  IVPTLQNIVSTVNLDCRL 62


>UniRef50_Q6BIC6 Cluster: Similarities with CA2369|CaTBP1 Candida
           albicans CaTBP1; n=1; Debaryomyces hansenii|Rep:
           Similarities with CA2369|CaTBP1 Candida albicans CaTBP1
           - Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 120

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +3

Query: 624 ADPXILPQLQNIVSTVNLDCKL 689
           A   I+P LQNIV+TVNLDC+L
Sbjct: 62  ATSGIVPTLQNIVATVNLDCRL 83


>UniRef50_UPI0000D57506 Cluster: PREDICTED: similar to CG2990-PB,
            isoform B; n=1; Tribolium castaneum|Rep: PREDICTED:
            similar to CG2990-PB, isoform B - Tribolium castaneum
          Length = 1146

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +2

Query: 485  CNSATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTLCRPXNFTTVTKH 658
            C  ++   A+N+ KY++ +D  R ++  T AK       DSS  TL R   F T+  H
Sbjct: 1073 CTKSSAQVATNTLKYELLEDKRRLTVAVTRAKRKLLIVGDSS--TLVRYKTFETILTH 1128


>UniRef50_Q4UMX8 Cluster: Valyl-tRNA synthetase; n=1; Rickettsia
           felis|Rep: Valyl-tRNA synthetase - Rickettsia felis
           (Rickettsia azadi)
          Length = 859

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 349 SNSFNSNSPRHNRHLPLWVRRQL*DLAQSWGLHRGLCTHMHQ 474
           S+ F  N  RH++  P+ +R Q  ++ ++W  +  L  H+HQ
Sbjct: 521 SDDFTVNKERHDKLFPMELRPQAHEIIRTWAFYTILKAHLHQ 562


>UniRef50_A7SEE3 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 690

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +2

Query: 464 ICTNSQLCNSATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTL 622
           +C  S LC+  T D  +++   D+S D  + +++S   +P+ SCPN S    L
Sbjct: 60  VC-GSVLCSDLTRDVLNSAHHGDLSSDIDQAALQSATKEPTQSCPNCSGQFLL 111


>UniRef50_Q4N3Z0 Cluster: Cation-transporting ATPase; n=1; Theileria
            parva|Rep: Cation-transporting ATPase - Theileria parva
          Length = 2664

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = -1

Query: 323  LVFFRLMQWCTYSRYVIRT--WQHMIHFSFFTFFIWKLRVSVLVSVDLTXYLLID 165
            LV F ++Q  + +R+++R+  W H + F  FTF I  LR+  ++SV L    LI+
Sbjct: 1560 LVTFMIVQHVS-NRFLLRSISWLHTVLFPIFTFVI--LRIPFIISVGLNLIFLIN 1611


>UniRef50_Q92GR9 Cluster: Valyl-tRNA synthetase; n=18;
           Rickettsiales|Rep: Valyl-tRNA synthetase - Rickettsia
           conorii
          Length = 812

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 349 SNSFNSNSPRHNRHLPLWVRRQL*DLAQSWGLHRGLCTHMHQ 474
           S+ F  N  RH++  P+ +R Q  ++ ++W  +  L  H+HQ
Sbjct: 474 SDDFAVNKDRHDKLFPMDLRPQAHEIIRTWAFYTILKAHLHQ 515


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,718,614
Number of Sequences: 1657284
Number of extensions: 9793339
Number of successful extensions: 31330
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 29667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31275
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)