Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L04
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...    34   0.017
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    29   0.84 
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    28   1.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.5  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   4.5  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   5.9  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    25   7.8  

>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +3

Query: 636 ILPQLQNIVSTVNLDCKL 689
           I+P LQNIV+TVNLDC+L
Sbjct: 54  IVPTLQNIVATVNLDCRL 71


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = -3

Query: 570 VDLIDFLQL----SSETSYFVEFEAASSVAELHSWLLVH 466
           +DL D+++L    S + S  + F+ A +VA LHS+ ++H
Sbjct: 596 IDLFDYIELKPSISEKESKAIFFQIALAVAHLHSFDIIH 634


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 497 TDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTLCRPXNFTT 646
           TDD      +    DDS ++    +N   S S   D  D++LC+P NF T
Sbjct: 196 TDDGEEVCIRLAKVDDSFQRKHTVSNFSVSKS---DDHDSSLCQPPNFVT 242


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 223  HIKKVKKEKWIICCQVRITYLE 288
            H+K++ KE  II CQ ++ +LE
Sbjct: 1167 HVKRISKEMEIISCQRQLLFLE 1188


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 470 TNSQLCN-SATDDAASNSTKYDVSDDSCRKSI 562
           T SQL + SA +D+ SNST+YD    S  +S+
Sbjct: 334 TRSQLNDLSAENDSTSNSTEYDDQLQSILRSL 365


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 225 YKESK-ERKMDHMLPSPYNIPGIGTPLHQPEE 317
           YK S  E++++H   S  ++PG  +PL  P++
Sbjct: 62  YKSSAHEQRVNHTTDSMAHVPGNNSPLQTPQK 93


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 573 MLSQASPAPMTPLTPLSADPXILPQLQ 653
           ++S ASP  M  LTP  + P  LPQL+
Sbjct: 80  VVSIASPRQMQVLTPPLSCPESLPQLE 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,142
Number of Sequences: 5004
Number of extensions: 41917
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)