Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L04
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)               29   3.6  
SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)             29   3.6  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             28   8.2  

>SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 543 IAAGNLSSQQMLSQASPAPMTPLTPLSADPXILP 644
           +  GN SS +  S A  +PMTPLTP   +   LP
Sbjct: 308 VTNGNASSNETTSSAPASPMTPLTPTIDEVLGLP 341


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +3

Query: 546 AAGNLSSQQML-----SQASPAPMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
           A G  + +QM+      +A P P TP   L     +LP +QN V      CK+
Sbjct: 206 AIGQTNKEQMILIGRGKRAPPHPFTPRHQLITPQVLLPPIQNAVLVFIFSCKV 258


>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
          Length = 491

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 204 NTHPKFPYKESKERKMDHML-PSPYNIPGIGTPLHQP 311
           N HP  P  E K++K +H L P P + P   TP+H+P
Sbjct: 316 NIHPLEP--EQKKKKGEHFLFPKP-SFPKKSTPVHRP 349


>SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)
          Length = 495

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 335 RQDLLVFFRLMQWCTYSRYVIRTWQ 261
           RQD L FFR++ W   SR++ R +Q
Sbjct: 45  RQDQLAFFRIIAWKRGSRWIRRGYQ 69


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 394 PLWVRRQL*DLAQSWGLHR 450
           PLWV  +  DLA+ WGL R
Sbjct: 689 PLWVNERNVDLAEDWGLGR 707


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/63 (22%), Positives = 25/63 (39%)
 Frame = +2

Query: 452  VYAHICTNSQLCNSATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTLCRP 631
            +Y   C N   C        S++ +  ++   C +S+          CP +SS   LC P
Sbjct: 3425 IYGEACPNGTFC-----PPGSSAPRECLAGYFCNRSMSQAPCPAGYYCPRNSSQPVLCPP 3479

Query: 632  XNF 640
             ++
Sbjct: 3480 GHY 3482


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,561,086
Number of Sequences: 59808
Number of extensions: 334176
Number of successful extensions: 1172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)