Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_L04
(689 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U35147-1|AAA79092.1| 354|Drosophila melanogaster TATA-box bindi... 58 1e-08
U11718-1|AAA68629.1| 353|Drosophila melanogaster TATA-box bindi... 56 5e-08
M38388-1|AAA28926.1| 353|Drosophila melanogaster TATA-consensus... 56 5e-08
M38082-1|AAA28931.1| 353|Drosophila melanogaster TATA-box bindi... 56 5e-08
AY069663-1|AAL39808.1| 353|Drosophila melanogaster LD44083p pro... 56 5e-08
AE013599-3256|AAF46754.1| 353|Drosophila melanogaster CG9874-PA... 56 5e-08
AY864367-1|AAX38005.1| 574|Drosophila melanogaster scavenger re... 33 0.37
AY865073-2|AAW79477.1| 629|Drosophila melanogaster SR-CI protein. 29 7.9
AY865065-2|AAW79462.1| 632|Drosophila melanogaster SR-CI protein. 29 7.9
AY865061-2|AAW79454.1| 632|Drosophila melanogaster SR-CI protein. 29 7.9
AY865059-1|AAW79451.1| 632|Drosophila melanogaster SR-CI protein. 29 7.9
AE014298-2649|AAN09453.1| 357|Drosophila melanogaster CG32494-P... 29 7.9
>U35147-1|AAA79092.1| 354|Drosophila melanogaster TATA-box binding
protein protein.
Length = 354
Score = 57.6 bits (133), Expect = 1e-08
Identities = 29/47 (61%), Positives = 32/47 (68%)
Frame = +3
Query: 549 AGNLSSQQMLSQASPAPMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
AG+ S + PMTP TP SADP I+PQLQNIVSTVNL CKL
Sbjct: 147 AGDALSNIHQTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKL 193
Score = 35.5 bits (78), Expect = 0.069
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 249 MDHMLPSPYNIPGIGTPLHQPEED 320
MD ML ++IP IGTPLHQ E D
Sbjct: 1 MDQMLSPNFSIPSIGTPLHQMEAD 24
>U11718-1|AAA68629.1| 353|Drosophila melanogaster TATA-box binding
protein protein.
Length = 353
Score = 56.0 bits (129), Expect = 5e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3
Query: 597 PMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
PMTP TP SADP I+PQLQNIVSTVNL CKL
Sbjct: 162 PMTPATPGSADPGIVPQLQNIVSTVNLCCKL 192
Score = 35.5 bits (78), Expect = 0.069
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 249 MDHMLPSPYNIPGIGTPLHQPEED 320
MD ML ++IP IGTPLHQ E D
Sbjct: 1 MDQMLSPNFSIPSIGTPLHQMEAD 24
>M38388-1|AAA28926.1| 353|Drosophila melanogaster
TATA-consensus-binding transcriptionfactor TFII protein.
Length = 353
Score = 56.0 bits (129), Expect = 5e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3
Query: 597 PMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
PMTP TP SADP I+PQLQNIVSTVNL CKL
Sbjct: 162 PMTPATPGSADPGIVPQLQNIVSTVNLCCKL 192
Score = 35.5 bits (78), Expect = 0.069
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 249 MDHMLPSPYNIPGIGTPLHQPEED 320
MD ML ++IP IGTPLHQ E D
Sbjct: 1 MDQMLSPNFSIPSIGTPLHQMEAD 24
>M38082-1|AAA28931.1| 353|Drosophila melanogaster TATA-box binding
protein protein.
Length = 353
Score = 56.0 bits (129), Expect = 5e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3
Query: 597 PMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
PMTP TP SADP I+PQLQNIVSTVNL CKL
Sbjct: 162 PMTPATPGSADPGIVPQLQNIVSTVNLCCKL 192
Score = 35.5 bits (78), Expect = 0.069
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 249 MDHMLPSPYNIPGIGTPLHQPEED 320
MD ML ++IP IGTPLHQ E D
Sbjct: 1 MDQMLSPNFSIPSIGTPLHQMEAD 24
>AY069663-1|AAL39808.1| 353|Drosophila melanogaster LD44083p
protein.
Length = 353
Score = 56.0 bits (129), Expect = 5e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3
Query: 597 PMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
PMTP TP SADP I+PQLQNIVSTVNL CKL
Sbjct: 162 PMTPATPGSADPGIVPQLQNIVSTVNLCCKL 192
Score = 35.5 bits (78), Expect = 0.069
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 249 MDHMLPSPYNIPGIGTPLHQPEED 320
MD ML ++IP IGTPLHQ E D
Sbjct: 1 MDQMLSPNFSIPSIGTPLHQMEAD 24
>AE013599-3256|AAF46754.1| 353|Drosophila melanogaster CG9874-PA
protein.
Length = 353
Score = 56.0 bits (129), Expect = 5e-08
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +3
Query: 597 PMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
PMTP TP SADP I+PQLQNIVSTVNL CKL
Sbjct: 162 PMTPATPGSADPGIVPQLQNIVSTVNLCCKL 192
Score = 35.5 bits (78), Expect = 0.069
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 249 MDHMLPSPYNIPGIGTPLHQPEED 320
MD ML ++IP IGTPLHQ E D
Sbjct: 1 MDQMLSPNFSIPSIGTPLHQMEAD 24
>AY864367-1|AAX38005.1| 574|Drosophila melanogaster scavenger
receptor protein.
Length = 574
Score = 33.1 bits (72), Expect = 0.37
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +2
Query: 455 YAHICTNSQLCNSATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTLCRPX 634
Y CT L + D ++ T S + RKS +T + + +S TT RP
Sbjct: 320 YLEECTKELLTTTEDDISSVPPTVTSTSTSTTRKSTTTTTTTTTTTTTTSTSTTTTKRPT 379
Query: 635 NFTTVTK 655
TT TK
Sbjct: 380 TTTTTTK 386
>AY865073-2|AAW79477.1| 629|Drosophila melanogaster SR-CI protein.
Length = 629
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/67 (29%), Positives = 27/67 (40%)
Frame = +2
Query: 455 YAHICTNSQLCNSATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTLCRPX 634
Y CT L + D ++ T S + RKS +T + +S TT RP
Sbjct: 377 YLEECTKEMLTTTEDDISSVPPTVTSTSTSTTRKSTTTTTTSTT-----STSTTTTKRPT 431
Query: 635 NFTTVTK 655
TT TK
Sbjct: 432 TTTTTTK 438
>AY865065-2|AAW79462.1| 632|Drosophila melanogaster SR-CI protein.
Length = 632
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +2
Query: 455 YAHICTNSQLCNSATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTLCRPX 634
Y CT L + D ++ T +S + RKS +T + +S TT RP
Sbjct: 377 YLEECTKELLTTTEDDISSLPPTVTSISTSTTRKSTTTTTTSTT-----TTSTTTTKRPT 431
Query: 635 NFTTVTK 655
TT TK
Sbjct: 432 TTTTTTK 438
>AY865061-2|AAW79454.1| 632|Drosophila melanogaster SR-CI protein.
Length = 632
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +2
Query: 455 YAHICTNSQLCNSATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTLCRPX 634
Y CT L + D ++ T +S + RKS +T + +S TT RP
Sbjct: 377 YLEECTKELLTTTEDDISSLPPTVTSISTSTTRKSTTTTTTSTT-----TTSTTTTKRPT 431
Query: 635 NFTTVTK 655
TT TK
Sbjct: 432 TTTTTTK 438
>AY865059-1|AAW79451.1| 632|Drosophila melanogaster SR-CI protein.
Length = 632
Score = 28.7 bits (61), Expect = 7.9
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +2
Query: 455 YAHICTNSQLCNSATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTTLCRPX 634
Y CT L + D ++ T +S + RKS +T + +S TT RP
Sbjct: 377 YLEECTKELLTTTEDDISSLPPTVTSISTSTTRKSTTTTTTSTT-----TTSTTTTKRPT 431
Query: 635 NFTTVTK 655
TT TK
Sbjct: 432 TTTTTTK 438
>AE014298-2649|AAN09453.1| 357|Drosophila melanogaster CG32494-PA
protein.
Length = 357
Score = 28.7 bits (61), Expect = 7.9
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 304 INLKKTSKSCLMQCNSNS-FNSNSPRHNRHLPLWVRRQL*DLAQSWGLHRGLCTHMHQQP 480
I L K S S N+N+ N+N+ RH RH RRQ L Q L L H QQ
Sbjct: 189 IQLPKGSSSSSSSSNNNTCHNANNQRHWRHTRQQSRRQQQQLRQLLLLSFEL-QHQQQQQ 247
Query: 481 AMQ 489
Q
Sbjct: 248 QQQ 250
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,695,471
Number of Sequences: 53049
Number of extensions: 480872
Number of successful extensions: 1968
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1962
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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