Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L04
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10401-8|AAA19055.1|  340|Caenorhabditis elegans Tata-binding pr...    35   0.063
L07754-1|AAA03582.1|  340|Caenorhabditis elegans TATA-box bindin...    35   0.063
AF303249-1|AAG50207.1|  340|Caenorhabditis elegans transcription...    35   0.063
AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z66564-1|CAA91471.1|  329|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AL032649-4|CAA21703.2|  511|Caenorhabditis elegans Hypothetical ...    27   9.6  
AL032649-3|CAA21702.2|  502|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E...    27   9.6  

>U10401-8|AAA19055.1|  340|Caenorhabditis elegans Tata-binding
           protein protein 1 protein.
          Length = 340

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = +3

Query: 594 APMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
           A M P TP S     +P LQNIVSTVNL  +L
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQL 181


>L07754-1|AAA03582.1|  340|Caenorhabditis elegans TATA-box binding
           protein protein.
          Length = 340

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = +3

Query: 594 APMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
           A M P TP S     +P LQNIVSTVNL  +L
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQL 181


>AF303249-1|AAG50207.1|  340|Caenorhabditis elegans transcription
           factor TFIID protein.
          Length = 340

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = +3

Query: 594 APMTPLTPLSADPXILPQLQNIVSTVNLDCKL 689
           A M P TP S     +P LQNIVSTVNL  +L
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQL 181


>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 494 ATDDAASNSTKYDVSDDSCRKSIKSTNAKPS*SCPNDSSDTT 619
           ++DD++ NS   + SDD  +   K   +K   S  +DSSD++
Sbjct: 78  SSDDSSDNSDSSESSDDDKKSKKKKKKSKKDSSDSSDSSDSS 119


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
 Frame = +2

Query: 398 SGFVANCRIWRNHGDSTEVYAHICTNSQLCNSA---TDDAASNSTKYDVSDDSCRKSIKS 568
           S   +NC  W  +G  T  +      +Q C S      D++ +S+    +  S   S  +
Sbjct: 3   SDSASNCANWVANGFCTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAA 62

Query: 569 TNAKPS*SCPNDSSDTTLCRPXNFTTVTKHS 661
           T++  S S  + SS +      + TT    S
Sbjct: 63  TSSDDSSSSSSSSSSSASSTSSSDTTTADSS 93


>Z66564-1|CAA91471.1|  329|Caenorhabditis elegans Hypothetical
           protein F52D10.2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 33  LVWLNSVFTVXIHCXNCFADPLNLQIISQFRXYCSXSKHDISV 161
           +++L +V T+     NC+  PL+L     ++ YCS ++ D+ +
Sbjct: 37  VIYLGNVLTIMARGENCYEKPLSL----IWKAYCSRARSDLGM 75


>U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical
           protein F39B3.2 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 545 SCRKSIKSTNAKP---S*SCPNDSSDTTLCRPXNFTTVTKHSLY 667
           SCRK IKST         +  N+ S+ +LC P +FTT     +Y
Sbjct: 343 SCRKCIKSTLIGACIYDMAQWNNDSEVSLCAPSSFTTGNATKVY 386


>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
           protein Y49E10.11b protein.
          Length = 1089

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 410 ANCRIWRNHGDSTEVYAHICTNSQLCNSATDDAASNSTKYD 532
           A+ R+W   GD  E   +I  +  LC++ T+    + T Y+
Sbjct: 641 ADIRVWMLTGDKRETAINIAHSCALCHTNTELLIVDKTTYE 681


>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
           protein Y49E10.11a protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 410 ANCRIWRNHGDSTEVYAHICTNSQLCNSATDDAASNSTKYD 532
           A+ R+W   GD  E   +I  +  LC++ T+    + T Y+
Sbjct: 641 ADIRVWMLTGDKRETAINIAHSCALCHTNTELLIVDKTTYE 681


>AL032649-4|CAA21703.2|  511|Caenorhabditis elegans Hypothetical
           protein Y55D9A.2b protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 301 CINLKKTSKSCLMQCNSNSFNSNSP 375
           C +++K   +C++Q N N+  ++SP
Sbjct: 267 CYSIEKLEDACILQVNGNNVKTSSP 291


>AL032649-3|CAA21702.2|  502|Caenorhabditis elegans Hypothetical
           protein Y55D9A.2a protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 301 CINLKKTSKSCLMQCNSNSFNSNSP 375
           C +++K   +C++Q N N+  ++SP
Sbjct: 267 CYSIEKLEDACILQVNGNNVKTSSP 291


>AF034078-1|AAC02976.1|  815|Caenorhabditis elegans putative E1-E2
           ATPase protein.
          Length = 815

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 410 ANCRIWRNHGDSTEVYAHICTNSQLCNSATDDAASNSTKYD 532
           A+ R+W   GD  E   +I  +  LC++ T+    + T Y+
Sbjct: 317 ADIRVWMLTGDKRETAINIAHSCALCHTNTELLIVDKTTYE 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,559
Number of Sequences: 27780
Number of extensions: 241707
Number of successful extensions: 773
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)