Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L04
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.90 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 522 VEFEAASSVAELHSWL 475
           +EF+  +SV ELHSW+
Sbjct: 80  MEFDDWTSVMELHSWM 95


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 627 DPXILPQLQNIVSTVNLD 680
           +P I+P++QN   T N D
Sbjct: 640 EPPIMPRVQNATDTTNFD 657


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 352 NSFNSNSPRHNRHLPLWVRRQL*DLAQSWGLHRG 453
           +SFN+ + +  + +PL+V R L       G  RG
Sbjct: 67  DSFNNQADKSEKRIPLYVCRVLHTTVWVAGAQRG 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,979
Number of Sequences: 438
Number of extensions: 2795
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)