Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L04
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13445.1 68416.m01691 transcription initiation factor IID-1 (...    37   0.011
At1g55520.2 68414.m06352 transcription initiation factor IID-2 (...    37   0.014
At1g55520.1 68414.m06351 transcription initiation factor IID-2 (...    37   0.014
At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.9  

>At3g13445.1 68416.m01691 transcription initiation factor IID-1
           (TFIID-1) / TATA-box factor 1 / TATA sequence-binding
           protein 1 (TBP1) identical to Swiss-Prot:P28147
           transcription initiation factor TFIID-1 (TATA-box factor
           1)(TATA sequence-binding protein 1) (TBP-1) [Arabidopsis
           thaliana]
          Length = 200

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 19/25 (76%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = +3

Query: 618 LSADPX-ILPQLQNIVSTVNLDCKL 689
           LS  P  I+P LQNIVSTVNLDCKL
Sbjct: 14  LSKHPSGIVPTLQNIVSTVNLDCKL 38


>At1g55520.2 68414.m06352 transcription initiation factor IID-2
           (TFIID-2) / TATA-box factor 2 / TATA sequence-binding
           protein 2 (TBP2) identical to
           Swiss-Prot:P28148|TF22_ARATH Transcription initiation
           factor TFIID-2 (TATA-box factor 2) (TATA
           sequence-binding protein 2) (TBP-2) [Arabidopsis
           thaliana]
          Length = 200

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +3

Query: 636 ILPQLQNIVSTVNLDCKL 689
           I+P LQNIVSTVNLDCKL
Sbjct: 21  IVPTLQNIVSTVNLDCKL 38


>At1g55520.1 68414.m06351 transcription initiation factor IID-2
           (TFIID-2) / TATA-box factor 2 / TATA sequence-binding
           protein 2 (TBP2) identical to
           Swiss-Prot:P28148|TF22_ARATH Transcription initiation
           factor TFIID-2 (TATA-box factor 2) (TATA
           sequence-binding protein 2) (TBP-2) [Arabidopsis
           thaliana]
          Length = 200

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +3

Query: 636 ILPQLQNIVSTVNLDCKL 689
           I+P LQNIVSTVNLDCKL
Sbjct: 21  IVPTLQNIVSTVNLDCKL 38


>At2g36750.1 68415.m04508 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 491

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 482 LCNSATDDAASNSTKYDVSDDSCRKSIKS 568
           LCN   +D A    K D+  D C K + S
Sbjct: 251 LCNKLGEDQAERGNKADIDQDECIKWLDS 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,801,313
Number of Sequences: 28952
Number of extensions: 219803
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)