Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L03
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)                   179   1e-45
SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)                    69   2e-12
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)                28   7.1  
SB_56499| Best HMM Match : MFS_1 (HMM E-Value=0.29)                    27   9.4  

>SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
          Length = 119

 Score =  179 bits (436), Expect = 1e-45
 Identities = 84/115 (73%), Positives = 92/115 (80%)
 Frame = +1

Query: 46  QFQSKASHSFAXRKAEGAKXXXXXXXXXXXXXXKAPKARLGXLDKKKYLVPSDLTVGQFY 225
           +++ K  H F  R+AEG K              KAPKAR+G LDKKKYLVPSDLTVGQFY
Sbjct: 2   KWEYKEEHPFEKRRAEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFY 61

Query: 226 FLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 390
           FLIRKRIHLRPEDALFFFVNNVIPPTSATMG LYQEHH+EDFFLYIA+SDE+VYG
Sbjct: 62  FLIRKRIHLRPEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116


>SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
          Length = 140

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +1

Query: 163 LGXLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQEHH 339
           L  LDK K+LVP +LT+ QF  +IR R+ L    A +  VNN  +   S TM  LY+E  
Sbjct: 51  LPLLDKTKFLVPQELTMSQFVTIIRNRMSLSSTQAFYLIVNNKSLASMSMTMAELYREEK 110

Query: 340 DEDFFLYIAFSDENVYGN 393
           DED FLY+ ++ + ++G+
Sbjct: 111 DEDGFLYMVYASQEMFGS 128


>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 384 DIFVGKC-YV*KEIFIMVFLVERPHCCRCGWNDIVHEEEKCVFRPQVNTFPDQE 226
           D+ VG C Y      +   L +RP       +++V ++++ VF+P  +T  DQ+
Sbjct: 132 DLAVGYCQYDHLASVLTQLLTDRPEASTEILDELVRDKKRAVFKPNFDTIQDQQ 185


>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -1

Query: 423 NYLKVNNLELISIDIFVGKCYV*KEIFIMVFLVERPHCCRCGWNDIVHEEEK 268
           N L+ NN +L +  +F G C+V K + IM FLV    C R   +  + +++K
Sbjct: 586 NCLEYNNTQL-AYTVF-GLCFVCKLVVIMGFLVSYLSCRRINKSTRLRQDDK 635


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 175 DKKKYLVPSDLTVGQFYFLIRKRIHLR 255
           D K YL P D   G+FY L   +IH+R
Sbjct: 231 DTKSYLTPKDSKPGRFYIL--PKIHIR 255


>SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
          Length = 736

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +3

Query: 306 CNNGVSLPRTP**RFLSIHSIFRRKCLWKLIPNYSLSNS----FTLSDHMVKFNLSLRLK 473
           C N  SLP  P  +   + ++ +++C      +Y L  +    F+ SD  +   L L   
Sbjct: 383 CGNRGSLPPPPPGQLAKLLAVRQKQCEKYPTSHYMLKVAHLQYFSYSDSKINSKLKLNYV 442

Query: 474 LCIILWYFFIINWHIILYLS 533
           LC+  W     + H++  +S
Sbjct: 443 LCLNTWLSDQFDKHMVYIVS 462


>SB_56499| Best HMM Match : MFS_1 (HMM E-Value=0.29)
          Length = 274

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 399 PNYSLSNSFTLSDHMVKFNLSL-RLKLCIILWYFFIINWH-IILYLSSY 539
           P+   +++ T+S H+V F ++L  +K     +YFF    H ++++   Y
Sbjct: 172 PSVDFTSALTVSKHLVTFAVTLDHIKRFFTFFYFFDAECHNVVVFQGRY 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,481,382
Number of Sequences: 59808
Number of extensions: 298145
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)