Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L03
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...   158   3e-39
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...   158   3e-39
Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical pr...    59   3e-09
Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score =  158 bits (384), Expect = 3e-39
 Identities = 75/111 (67%), Positives = 84/111 (75%)
 Frame = +1

Query: 58  KASHSFAXRKAEGAKXXXXXXXXXXXXXXKAPKARLGXLDKKKYLVPSDLTVGQFYFLIR 237
           K  ++F  R+AEG K              KAPK++L  LDKKKYLVPSDLTVGQFYFLIR
Sbjct: 6   KEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIR 65

Query: 238 KRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 390
           KRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 66  KRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score =  158 bits (384), Expect = 3e-39
 Identities = 75/111 (67%), Positives = 84/111 (75%)
 Frame = +1

Query: 58  KASHSFAXRKAEGAKXXXXXXXXXXXXXXKAPKARLGXLDKKKYLVPSDLTVGQFYFLIR 237
           K  ++F  R+AEG K              KAPK++L  LDKKKYLVPSDLTVGQFYFLIR
Sbjct: 6   KEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIR 65

Query: 238 KRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 390
           KRI LRPEDALFFFVNNVIP T  TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 66  KRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116


>Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical
           protein ZK593.6 protein.
          Length = 130

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
 Frame = +1

Query: 163 LGXLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN-NVIPPTSATMGSLYQEHH 339
           L  +D+ K+LVP  +TV +   ++R+R+ L P+ A F  VN   +   S +M +LY +  
Sbjct: 54  LPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQER 113

Query: 340 DEDFFLYIAFSDENVYG 390
           D D F+Y+ ++ +  +G
Sbjct: 114 DPDGFVYMVYTSQPAFG 130


>Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical
           protein C31A11.7 protein.
          Length = 706

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 465 RLKLCIILWYFFIINWHIILYLSSYE*YKTFQ 560
           RL  C  + +FF + W++ +  SS   Y TFQ
Sbjct: 606 RLSYCAYIVHFFTLFWYLNINDSSMHFYSTFQ 637


>AF026204-2|AAB71251.2|  247|Caenorhabditis elegans Hypothetical
           protein C30E1.6 protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +3

Query: 420 SFTLSDHMVKFNLSLRLKLCIILWYFFIINWHIILYLSSYE*YKTFQASKGLLCFHIFVX 599
           SFT+ +  + F++ L  KL +++++FF I    I+   ++   K+F  S  LL    FV 
Sbjct: 116 SFTIPNFSISFSIFLWAKLQVLIYFFFYIVRKAIIEHKTFT--KSFIGSCTLLII-AFVL 172

Query: 600 VE 605
           +E
Sbjct: 173 LE 174


>Z70780-6|CAA94823.1|  614|Caenorhabditis elegans Hypothetical
           protein F46B6.7 protein.
          Length = 614

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 328 QEHHDEDFFLYIAFSDENVYGN*FQIIHFQIVLHYLTI 441
           +E  D  F L   F   N  GN  +IIH   ++H+L +
Sbjct: 296 REREDTSFQLQCIFCRYNARGNRSKIIHHLYMIHHLNL 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,564,552
Number of Sequences: 27780
Number of extensions: 242103
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)