Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L01
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    64   7e-12
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    29   0.24 
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    25   5.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   5.1  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    24   9.0  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   9.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   9.0  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 64.1 bits (149), Expect = 7e-12
 Identities = 29/41 (70%), Positives = 31/41 (75%)
 Frame = +2

Query: 128 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 250
           YG+GSR C     R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 14  YGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54



 Score = 27.1 bits (57), Expect = 0.96
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 88  MGHANLWYSHPR 123
           M H N+W+SHPR
Sbjct: 1   MAHENVWFSHPR 12


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 101  IFGILTLAVYGQGSRSCRSCSNRHGLIRKYGLNICRQCFRE 223
            I G++ +A Y + S  CRSC NR    + Y     +  F+E
Sbjct: 1154 ICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQE 1194


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 130 RTRISVMPILLQQA-WLN--PQVRFEHMQTVLQRVCS*HRIQEAGL 258
           +T +S +  LL+ A  +N  PQ+RFEH +  L+RV   +  ++A L
Sbjct: 4   KTNLSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAML 49


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 87  NG-PRKSLVFSPSQXTDKDLGHADP---APTGMA*SASTV*TYADSASES 224
           NG P+KS+ FS S       GH  P   A T ++ S S+   +A  AS +
Sbjct: 384 NGEPQKSIEFSESGAASPQAGHPPPWAAASTSVSSSTSSPAPWAKPASSA 433


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 74  FNFLKWATQIFGILTLAVYGQGSRSCRSCSNRHGLIRK 187
           F FL +A+ +  ++  +VYG      +  SNR G+  K
Sbjct: 414 FVFLCFASSLGALIHRSVYGSALSYVKYTSNRAGMFFK 451


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 131 GQGSRSCRSCSNRHGLIRKYGLNICRQC 214
           G GS    +  N+ G +  +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +1

Query: 10   FFVQVRHLVRCLSFVAR*RATI*FLKMGHANLWYSHPRSXRTRIS 144
            FFV  R  +R LS     R         HAN W  + R  RTRI+
Sbjct: 1561 FFVDYREFIRWLS-----RGN----SRSHANSWIGYCRLTRTRIT 1596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,172,439
Number of Sequences: 5004
Number of extensions: 20191
Number of successful extensions: 44
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)