Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_L01
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812... 69 1e-12
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338 69 2e-12
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 69 2e-12
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207... 29 1.6
09_02_0388 - 8450728-8450836,8451114-8451229,8451618-8451827 28 2.7
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 27 4.8
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411... 27 6.3
>12_02_0486 +
19577507-19577568,19578119-19578218,19581128-19581214,
19581852-19581914
Length = 103
Score = 68.9 bits (161), Expect = 1e-12
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = +2
Query: 128 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 253
YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K+
Sbjct: 14 YGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKV 55
Score = 27.5 bits (58), Expect = 3.6
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 88 MGHANLWYSHPRS 126
MGH+N+W SHP++
Sbjct: 1 MGHSNVWNSHPKN 13
>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
Length = 56
Score = 68.5 bits (160), Expect = 2e-12
Identities = 30/41 (73%), Positives = 30/41 (73%)
Frame = +2
Query: 128 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 250
YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 14 YGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
Score = 27.5 bits (58), Expect = 3.6
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 88 MGHANLWYSHPRS 126
MGH+N+W SHP++
Sbjct: 1 MGHSNVWNSHPKN 13
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 68.5 bits (160), Expect = 2e-12
Identities = 30/41 (73%), Positives = 30/41 (73%)
Frame = +2
Query: 128 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 250
YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 14 YGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
Score = 27.5 bits (58), Expect = 3.6
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 88 MGHANLWYSHPRS 126
MGH+N+W SHP++
Sbjct: 1 MGHSNVWNSHPKN 13
>03_02_0644 +
10118790-10119559,10120252-10120432,10120526-10120725,
10120834-10120992,10122375-10122741
Length = 558
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +1
Query: 79 FLKMGHANLWYSHPRSXRTRISVMPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQEAGL 258
F+ G++N++Y+H + P L++ NPQV +V RV H I +
Sbjct: 305 FVNGGNSNIFYAHEYNATVEFYWAPFLVESNSDNPQV-----HSVPDRVIQWHSIAKHAH 359
Query: 259 NGVGI 273
N +G+
Sbjct: 360 NWLGV 364
>09_02_0388 - 8450728-8450836,8451114-8451229,8451618-8451827
Length = 144
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 110 ILTLAVYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIG 241
I T V G+ C SC NR L K ++ R + DIG
Sbjct: 92 IETFIVQSTGTNPCSSCRNRSLLTAKLNFSLDLNDIRVISEDIG 135
>01_03_0260 -
14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +2
Query: 71 QFNF--LKWATQIFGILTLAVYGQGSRSCRSCSNRHGL 178
Q+NF K QI G L A+Y +G R S +HGL
Sbjct: 403 QYNFHCQKLGMQIRGALITALYRKGLRLSCSARQKHGL 440
>03_05_0487 + 24838620-24838967,24840526-24840747,24840819-24841109,
24841316-24841513,24841641-24841705,24841788-24841874,
24841988-24842108,24842200-24842244,24842321-24842458,
24842571-24842643,24842723-24842799,24842882-24842989,
24843108-24843224,24843524-24843679,24843780-24843881,
24844036-24844161,24844237-24844314,24844390-24844485,
24844592-24844707,24844781-24844850,24844930-24844983,
24845062-24845205,24845297-24845596,24845780-24846202,
24846316-24846429
Length = 1222
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 107 GILTLAVYGQGSRSCRSCSNRHGLIRKYGLNICRQCFRE 223
G++ +A + S CR C N+ +++ + C+ F+E
Sbjct: 1160 GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,786,601
Number of Sequences: 37544
Number of extensions: 139494
Number of successful extensions: 285
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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