Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L01
         (376 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)                   33   0.075
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_19563| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)
          Length = 335

 Score = 33.1 bits (72), Expect = 0.075
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 192 PYLRI-KPCLLEQDRHDRDPCPXTARVRIPKIC 97
           PY RI K CL++QD      CP T   RIPK C
Sbjct: 27  PYRRIPKRCLVKQDHRIPKRCPVTQDDRIPKRC 59



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 177 KPCLLEQDRHDRDPCPXTARVRIPKIC 97
           K CL+ QD      CP T   RIPK C
Sbjct: 165 KRCLVTQDHRIPKRCPVTQDHRIPKRC 191



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 177 KPCLLEQDRHDRDPCPXTARVRIPKIC 97
           K C L QD      CP T   RIPK C
Sbjct: 117 KRCPLTQDGRIPKRCPVTQHHRIPKRC 143


>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 213 HCLHMFKPYLRIKPCLLEQDRHD 145
           H LH   P    KPCLL+ D H+
Sbjct: 318 HGLHFGSPARARKPCLLDHDEHE 340


>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 99  KSLVFSPSQXTDKDLGHADPAPTGMA*SASTV*TYADSASESMLMT*DSRSWTKWSRNNK 278
           +S V+      ++  G AD  PT +A    ++ T++ SA+    +  D   W+ WS  NK
Sbjct: 365 QSRVYPSQSDANQSSGSADIHPTPVA----SIITWSSSANSRFPVDGDWTEWSTWSYCNK 420


>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 92   ATQIFGILTLAVYGQGSRSCRSCSNRHG-LIRKYGLNICR 208
            A+++F  ++  +  + S++   C    G LI+ YG+N+C+
Sbjct: 1318 ASKMFNYVSEGISSKNSKTRMECLEELGCLIQVYGMNVCQ 1357


>SB_19563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 233 HEHTL*STVCICSNRTCGLSHACWSRI--GMTEILVRXL 123
           H H    ++ + SN T G + +CW+ +  G+  + V+ L
Sbjct: 32  HRHVRKESLWVLSNLTAGPAESCWAVVHAGLVPVTVKML 70


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 110 ILTLAVYGQGSRSC--RSCSNRHGLIRKYGLNICRQCFREYAHD 235
           ++T   Y +GS  C  +SC   +    +YG N C  C   Y+ D
Sbjct: 138 LITGYEYDRGSVQCSVKSCLLANRRPCEYGQNFCGPCLNGYSQD 181


>SB_35017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 131 GQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 256
           G+ +R   +C +   ++   G N+CR C   + +D   + +D
Sbjct: 59  GESARF-EACCDGQDMVNDNGANVCRNCGVHHGYDYAVEYVD 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,063,091
Number of Sequences: 59808
Number of extensions: 171709
Number of successful extensions: 477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)