Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_L01
         (376 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)            71   3e-13
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo...    71   3e-13
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo...    71   3e-13
At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa ...    30   0.58 
At4g13960.1 68417.m02159 F-box family protein contains F-box dom...    29   0.76 
At5g38386.1 68418.m04638 F-box family protein contains F-box dom...    26   7.1  
At1g60380.1 68414.m06798 apical meristem formation protein-relat...    26   7.1  
At5g14020.1 68418.m01639 expressed protein                             26   9.4  

>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
          Length = 56

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 30/41 (73%), Positives = 31/41 (75%)
 Frame = +2

Query: 128 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 250
           YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 14  YGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 88  MGHANLWYSHPR 123
           MGH+N+W SHP+
Sbjct: 1   MGHSNVWNSHPK 12


>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)
           ribosomal protein S29, rat, PIR:S30298
          Length = 56

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 30/41 (73%), Positives = 31/41 (75%)
 Frame = +2

Query: 128 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 250
           YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 14  YGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 88  MGHANLWYSHPR 123
           MGH+N+W SHP+
Sbjct: 1   MGHSNVWNSHPK 12


>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)
           ribosomal protein S29, rat, PIR:S30298
          Length = 56

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 30/41 (73%), Positives = 31/41 (75%)
 Frame = +2

Query: 128 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 250
           YG GSR CR C N HGLIRKYGLN CRQCFR  A +IGF K
Sbjct: 14  YGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 88  MGHANLWYSHPR 123
           MGH+N+W SHP+
Sbjct: 1   MGHSNVWNSHPK 12


>At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa
            polypeptide / RNA polymerase II subunit 2 (RPB135) (RPB2)
            (RP140) identical to SP|P38420 DNA-directed RNA
            polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA
            polymerase II subunit 2) {Arabidopsis thaliana}
          Length = 1188

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 98   QIFGILTLAVYGQGSRSCRSCSNRHGLIRKYGLNICRQCFRE 223
            ++ G++ +A   + S  CR C N+  +++ Y    C+  F+E
Sbjct: 1125 EVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQE 1166


>At4g13960.1 68417.m02159 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 434

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 207 LHMFKPYLRIKPCLLEQDRHDRDPCPXTARVRIPKIC 97
           +HM K ++   PCL+E + +  +  P   ++R+P++C
Sbjct: 367 MHMIKHFVNYFPCLMETNIYIEESGP--PKLRVPQVC 401


>At5g38386.1 68418.m04638 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -2

Query: 207 LHMFKPYLRIKPCLLEQDRHDRDPCPXTARVR-IPKI---CVAHFKKLNCC 67
           +HM K +L   PCL E           T + R IP++    V H+ KL+ C
Sbjct: 345 MHMIKHFLDYLPCLKEMKISYMKKNDHTTQFRVIPQVIAEMVEHYNKLSNC 395


>At1g60380.1 68414.m06798 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 318

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 209 VCICSNRTCGLSHAC 165
           +CI +NRTCG++  C
Sbjct: 223 ICIFANRTCGVTDKC 237


>At5g14020.1 68418.m01639 expressed protein 
          Length = 406

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 15  RSSSPSCXVSLICCSLAXNNLI 80
           + S P+C +S +CC LA   ++
Sbjct: 301 KGSEPACHLSAVCCFLAAAEIL 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,228,846
Number of Sequences: 28952
Number of extensions: 111399
Number of successful extensions: 225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)