Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K24
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 175 3e-44
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 170 8e-43
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 164 5e-41
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 130 8e-31
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 51 8e-07
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 36 0.031
01_01_0734 + 5726326-5727517,5727587-5727771,5727776-5728756 31 1.2
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 4.8
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 28 6.3
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 6.3
03_06_0131 - 31900700-31900992,31901039-31901720 28 8.3
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 175 bits (426), Expect = 3e-44
Identities = 77/115 (66%), Positives = 87/115 (75%)
Frame = +3
Query: 234 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTK 413
L G HGFH+H GD TNGC S G H+NP ++HG P RH GDLGN+ A ED GV
Sbjct: 155 LKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGED-GVAN 213
Query: 414 VSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 578
+ + DSQI L GPNSIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 214 IHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 170 bits (414), Expect = 8e-43
Identities = 78/115 (67%), Positives = 86/115 (74%)
Frame = +3
Query: 234 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTK 413
L G HGFHVH GD TNGC S G HFNP ++HG P RH GDLGNI A D GV
Sbjct: 37 LKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGAD-GVAN 95
Query: 414 VSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 578
V++ DSQI L G +SIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 96 VNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 134 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLD*G 244
KAV VL V GT+FF Q+ + P V+G V GL G
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGD-GPTSVTGSVSGLKPG 40
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 164 bits (399), Expect = 5e-41
Identities = 75/122 (61%), Positives = 85/122 (69%)
Frame = +3
Query: 222 RSRXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDS 401
R LT G HGFH+HEFGD TNGC S G HFNP HG P VRH GDLGNI A +
Sbjct: 83 RVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAE- 141
Query: 402 GVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLA 581
GV + +I D QI L GPNS++GR VVH DDLG GGHELS +TGNAGGR+ACGV+GL
Sbjct: 142 GVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLT 201
Query: 582 KI 587
+
Sbjct: 202 PL 203
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 130 bits (315), Expect = 8e-31
Identities = 60/97 (61%), Positives = 68/97 (70%)
Frame = +3
Query: 222 RSRXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDS 401
R L G HGFH+H FGD TNGC S G HFNP + HG PS RHVGDLGNI A +D
Sbjct: 43 RVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKD- 101
Query: 402 GVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLG 512
GV + I+D QISL GP+SI+GR +VVHAD DDLG G
Sbjct: 102 GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 51.2 bits (117), Expect = 8e-07
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Frame = +3
Query: 234 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTK 413
L+ GKHG+ ++EFGD T G S G +NP P +GDLG +EA E G +
Sbjct: 199 LSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEAGE-KGEAQ 251
Query: 414 VSIQDSQISLHGPNSIIGRTLVVHA--DPDDLGLGGHELSKTTG 539
S ++ + +IGR++ ++A D D G+ ++++ G
Sbjct: 252 FSASKEKLKV---VDLIGRSIALYATEDRSDPGIAAAVIARSAG 292
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 35.9 bits (79), Expect = 0.031
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 171 LFSSISRMKSHLLLFLERSRXLTKGKHGFHVHEFGDNTNGCTSAG 305
+ ++ + S L+ E L HGFHVH G TNGC G
Sbjct: 25 MLKAVDVLASSLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>01_01_0734 + 5726326-5727517,5727587-5727771,5727776-5728756
Length = 785
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 175 FLRSAG*KVTCCCFWRGPGX*LRVNTVSMCTNLVTTQMVAHQL 303
FL +AG + CCF PG ++T+ CT+ T +VA+ L
Sbjct: 13 FLTTAGLTLQTCCF-DSPGHSANLSTIWTCTSPTTDVLVANPL 54
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 447 GPNSIIGRTLVVHADPDDLGLGG 515
GP + +GR L+ +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 28.3 bits (60), Expect = 6.3
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = +3
Query: 303 GAHFNPEKQDH--GGPSSAVRHVGD--LGNIE---AIEDSGVTKVSIQDSQISLHGPNSI 461
GA +PE H G V D L NI A+ G+ V+ D+++SL
Sbjct: 222 GASHDPEALLHIAQGSRGTYSFVDDDNLANIAGALAVCLGGLKTVAAVDTRVSLKAAELS 281
Query: 462 IGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 572
G +V D GG+E S G A G + GV+
Sbjct: 282 GGGARIVRVDS-----GGYESSVACGGASGEVVVGVL 313
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 276 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 455
D TS GAH +P + H PSS + + + S T VS++ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
>03_06_0131 - 31900700-31900992,31901039-31901720
Length = 324
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 369 DLGNIEAIEDSGVTKVSIQDSQISLHGPNS 458
D+ ++ + DSG +I +S HGPNS
Sbjct: 120 DVDHLSILTDSGAVHRAISGEPVSEHGPNS 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,601,096
Number of Sequences: 37544
Number of extensions: 352410
Number of successful extensions: 886
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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