Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K24
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               165   3e-41
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                80   2e-15
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                55   5e-08
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  33   0.17 
SB_2865| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2)                      29   4.9  
SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)                 29   4.9  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)                   29   4.9  
SB_4039| Best HMM Match : Herpes_US9 (HMM E-Value=6.1)                 28   6.4  
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         28   8.5  
SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  165 bits (401), Expect = 3e-41
 Identities = 72/117 (61%), Positives = 91/117 (77%)
 Frame = +3

Query: 234 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTK 413
           L  G HGFH+H +GDNTNGC SAG HFNP K++HGGPS   RHVGDLGN+ A  D G   
Sbjct: 37  LKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGNVVA-GDDGKAC 95

Query: 414 VSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAK 584
           + + D+ ++L G +S++GR++VVHAD DDLG GGHE SKTTG+AGGR+ACGVIG+ +
Sbjct: 96  IDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGVIGITQ 152


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 39/71 (54%), Positives = 49/71 (69%)
 Frame = +3

Query: 360 HVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTG 539
           HVGDLGNI A ++   T    +D  + +     IIGR +VVHAD DDLG GGHELSK+TG
Sbjct: 1   HVGDLGNIIANQNGRAT-FRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56

Query: 540 NAGGRIACGVI 572
           N+G R+ CG+I
Sbjct: 57  NSGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 28/49 (57%), Positives = 34/49 (69%)
 Frame = +3

Query: 333 HGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLV 479
           HG P    RH+GDLGNIEA + +G+  VSI D  +SL G  SIIGR+LV
Sbjct: 2   HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
 Frame = +3

Query: 123 QCPPKQFAYFVVMLAELFSSISR---MKSHLLLFLERSRXLTKGKHGFHVHEFGDNTNGC 293
           Q P K+  YF+       + + +   ++  LL    +   +    H  H++    + + C
Sbjct: 264 QSPSKKTNYFIAPTNSNQTMLPKHADLRDQLLYCRNQQSLVNVSIHDNHLNPSSYDNHSC 323

Query: 294 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRT 473
            +  +  +  +  HGG  S++     +GN  +    G    S+ D+Q SL G  SI+G  
Sbjct: 324 LANQSSLSDNQSSHGGNHSSL-----VGNQSS---HGGNHSSLDDNQSSLGGNQSILGDN 375

Query: 474 LVVHADPDDLGLGGHELS 527
              H + +  GLG ++ S
Sbjct: 376 QSSHGN-EKSGLGDNQSS 392


>SB_2865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 28/104 (26%), Positives = 52/104 (50%)
 Frame = +1

Query: 250 TVSMCTNLVTTQMVAHQLELISTLKNKIMVVPVLLYAMSATSVTLRQLKTLESLKYQSKI 429
           TV M T L+T  MV   + ++  L   +MV  V +  ++   VTL  + T++ +      
Sbjct: 27  TVMMVT-LITVMMVTLVMVIMVKLVTVMMVTLVTVVMVTVMMVTLVMVITVKLVTVMMVT 85

Query: 430 LRSLFMDLTASLVAL*LSMLTLMTWDSVAMS*VRPLVMLVAVLL 561
           L ++ M     +  + + M+TL+T   V +  V+ +V LV V++
Sbjct: 86  LVTVVMVTVMMVTLVTVMMVTLVTVMMVTLVTVK-MVTLVMVMI 128


>SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2)
          Length = 259

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 241 RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 414
           R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE  +
Sbjct: 125 RIQKASHALGKLRTKVLQHQDIHLSTKLKVYNAVVLPSLLYGCETWTLYCRHIKKLE--R 182

Query: 415 YQSKILRSL 441
           + ++ LR++
Sbjct: 183 FHTRSLRAI 191


>SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
          Length = 401

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +1

Query: 241 RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 414
           R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE   
Sbjct: 180 RIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYRRHIKKLEQFH 239

Query: 415 YQS--KILRSLFMDLTASLVAL 474
            +S   I+R  + D   +L  L
Sbjct: 240 TRSLRAIMRIRWQDRITNLEVL 261


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 241  RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 414
            R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE  +
Sbjct: 3174 RIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYCRHIKKLE--R 3231

Query: 415  YQSKILRSL 441
            + ++ LR++
Sbjct: 3232 FHTRSLRAI 3240


>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
          Length = 1195

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 241  RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 414
            R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE  +
Sbjct: 944  RIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYCRHIKKLE--R 1001

Query: 415  YQSKILRSL 441
            + ++ LR++
Sbjct: 1002 FHTRSLRAI 1010


>SB_4039| Best HMM Match : Herpes_US9 (HMM E-Value=6.1)
          Length = 337

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +1

Query: 220 RGPGX*LRVNTVSMCTNLVTTQMVAHQLE-LISTLKNKIMVVPVLLYAMSATSVTLRQLK 396
           R P   LR   +    N  T+Q++   L  L +T  ++I+  P+L  A +ATS  LR   
Sbjct: 158 RRPSQILRT-ALPCLANTATSQILRTPLTCLANTATSQILRTPLLCMANTATSQILRTPL 216

Query: 397 TLESLKYQSKILRSLFM 447
           T  +    S+ILR+  +
Sbjct: 217 TCLANTATSQILRTALL 233


>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 201 HLLLFLERSRXLTKGKH-GFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLG 377
           H  L  E ++   KG+H G+  H+   +  G  S+G H        GG S    H G   
Sbjct: 482 HHYLPYEANKDNKKGRHQGYGRHDSHASHGGSVSSGRHREEYHHKRGGHSHDRHHHGYY- 540

Query: 378 NIEAIEDSGVTKVSIQDSQISLH 446
            I   + SG  +V+   ++ S H
Sbjct: 541 -IHKYDHSGARQVAYIPAKGSSH 562


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 282  TNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIED 398
            T+  +SA  HF+    DH  P S V    D+  +E+  +
Sbjct: 3205 TSASSSAKVHFSNAASDHDEPQSPVNAFHDMKTLESFSE 3243


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 363 VGDL-GNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVV 482
           VGDL G    I+ + ++ V   DS + L G + I GRTLV+
Sbjct: 142 VGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIFGRTLVL 181


>SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 241 RVNTVSMCTNLVTTQMVAHQ-LELISTLK-NKIMVVPVLLYAMSATSVTLRQLKTLESLK 414
           R+   S     + T+++ HQ + L + LK    +V+P LLY     ++  R +K LE  +
Sbjct: 576 RIQKASHALGKLRTKVLQHQDIRLSTKLKVYNAIVLPSLLYGCETWTLYRRHIKKLE--Q 633

Query: 415 YQSKILRSL 441
           + ++ LR++
Sbjct: 634 FHTRSLRAI 642


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,416,956
Number of Sequences: 59808
Number of extensions: 406067
Number of successful extensions: 908
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)