Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K24
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla... 168 4e-42
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ... 167 5e-42
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z... 157 9e-39
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ... 46 3e-05
At5g59980.1 68418.m07522 RNase P subunit p30 family protein cont... 32 0.32
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r... 31 0.98
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot... 31 0.98
At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transfera... 30 1.7
At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase, p... 29 2.3
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ... 29 4.0
At3g18670.1 68416.m02371 ankyrin repeat family protein contains ... 28 6.9
At1g47786.1 68414.m05316 acyl-protein thioesterase-related simil... 28 6.9
At5g18330.1 68418.m02157 U-box domain-containing protein weak si... 27 9.2
At4g33900.1 68417.m04810 kelch repeat-containing F-box family pr... 27 9.2
>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
(SODCP) / copper/zinc superoxide dismutase (CSD2)
identical to GP:3273753:AF061519
Length = 216
Score = 168 bits (408), Expect = 4e-42
Identities = 77/122 (63%), Positives = 85/122 (69%)
Frame = +3
Query: 222 RSRXLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDS 401
R LT G HGFH+HEFGD TNGC S G HFNP HG P RH GDLGNI A D
Sbjct: 96 RITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANAD- 154
Query: 402 GVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLA 581
GV + +I D+QI L GPNS++GR VVH DDLG GGHELS TTGNAGGR+ACGVIGL
Sbjct: 155 GVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLT 214
Query: 582 KI 587
+
Sbjct: 215 PL 216
>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
copper/zinc superoxide dismutase (CSD1) identical to
SWISS-PROT: P24704
Length = 152
Score = 167 bits (407), Expect = 5e-42
Identities = 75/115 (65%), Positives = 83/115 (72%)
Frame = +3
Query: 234 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTK 413
L G HGFHVH GD TNGC S G HFNP+ + HG P A RH GDLGNI + D G
Sbjct: 37 LKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNI-TVGDDGTAT 95
Query: 414 VSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 578
+I D QI L GPNSI+GR +VVHADPDDLG GGHELS TGNAGGR+ACG+IGL
Sbjct: 96 FTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGL 150
>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
superoxide dismutase (CSD3) identical to copper/zinc
superoxide dismutase GI:3273755
Length = 164
Score = 157 bits (380), Expect = 9e-39
Identities = 70/115 (60%), Positives = 84/115 (73%)
Frame = +3
Query: 234 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTK 413
L+ G HGFH+H FGD TNGC S G HFNP + HG P+ RH GDLGNI A +GV +
Sbjct: 43 LSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHAGDLGNILA-GSNGVAE 101
Query: 414 VSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 578
+ I+D I L G SI+GR +VVHADPDDLG GGH+LSK+TGNAG R+ CG+IGL
Sbjct: 102 ILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156
>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
putative similar to copper chaperone for superoxide
dismutase [Homo sapiens] gi|2431868|gb|AAC51764
Length = 254
Score = 45.6 bits (103), Expect = 3e-05
Identities = 30/89 (33%), Positives = 49/89 (55%)
Frame = +3
Query: 234 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTK 413
L+ G H + ++E+GD TNG S G+ +NP QD G +GDLG +EA + +G
Sbjct: 130 LSPGTHSWCINEYGDLTNGAASTGSLYNP-FQDQTG----TEPLGDLGTLEA-DKNGEAF 183
Query: 414 VSIQDSQISLHGPNSIIGRTLVVHADPDD 500
S + ++ + +IGR +VV+ D+
Sbjct: 184 YSGKKEKLKV---ADLIGRAVVVYKTDDN 209
>At5g59980.1 68418.m07522 RNase P subunit p30 family protein
contains Pfam PF01876: RNase P subunit p30
Length = 581
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 294 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVS 419
TS G +P K DHG P S V V ++GN E++ V + S
Sbjct: 458 TSEGGSMSPSKSDHGIPQSPV-EVNNMGNAAFEEEASVDENS 498
>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
response factor 30 (GI:20145855) {Arabidopsis thaliana}
Length = 313
Score = 30.7 bits (66), Expect = 0.98
Identities = 20/67 (29%), Positives = 23/67 (34%)
Frame = +3
Query: 258 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 437
H G NG +S H + H G SS H G+ SG SI S
Sbjct: 89 HSSGTGSTHNGHSSGSNHSSGTGSTHNGHSSGSNHSSSTGSTHNNHSSGSNHSSIVGSTH 148
Query: 438 SLHGPNS 458
HG S
Sbjct: 149 KNHGSGS 155
>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
/ BED zinc finger domain-containing protein /
transposase-related weak similarity to Tam3-transposase
[Antirrhinum majus] GI:16064; contains Pfam profiles
PF02892: BED zinc finger, PF05699: hAT family
dimerisation domain
Length = 676
Score = 30.7 bits (66), Expect = 0.98
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 450 PNSIIGRTLVVHADPDDLGLGGHELSKT 533
P +++ TLV H+DP D+GLG + S +
Sbjct: 3 PKAMMDMTLVPHSDPIDIGLGSSDKSNS 30
>At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 461
Score = 29.9 bits (64), Expect = 1.7
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Frame = +3
Query: 213 FLERSRXLTKGKHGFHVHEFGDNTNGCTSAGAHF---NPEKQDHGGPSSAVRHVGDLGNI 383
F +R+ TK F D + A + N +++ G + + H+G L N
Sbjct: 194 FWQRTLERTKSLRWILTSSFKDEYEDVDNHKASYKKSNDLNKENNGQNPQILHLGPLHNQ 253
Query: 384 EAIEDSGVTKVSIQDSQISLHG------PNSII 464
EA + +TK S + +S G PNS+I
Sbjct: 254 EATNNITITKTSFWEEDMSCLGWLQEQNPNSVI 286
>At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase,
putative similar to laccase [Pinus taeda][GI:13661207]
Length = 557
Score = 29.5 bits (63), Expect = 2.3
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Frame = +3
Query: 129 PPKQFAYFVVML-AELFSS----ISRMKSH--LLLFLERSRXLTKGKHGFHVHEFGDNTN 287
PPK F Y V L A L +S +SR+K + + L L+ + LT H FH+H +
Sbjct: 411 PPKAFNYTGVPLTANLGTSTGTRLSRVKFNTTIELVLQDTNLLTVESHPFHLHGYNFFVV 470
Query: 288 GCTSAGAHFNPEK 326
G T G +F+P+K
Sbjct: 471 G-TGVG-NFDPKK 481
>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 463
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 477 VVHADPDDLGLGGHELSKTTGNAGGRIACGVI 572
+ H +DL L LSKTTG+AG R G++
Sbjct: 270 ITHPVDEDLSL--FSLSKTTGHAGSRFGWGLV 299
>At3g18670.1 68416.m02371 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 598
Score = 27.9 bits (59), Expect = 6.9
Identities = 24/98 (24%), Positives = 44/98 (44%)
Frame = +1
Query: 328 KIMVVPVLLYAMSATSVTLRQLKTLESLKYQSKILRSLFMDLTASLVAL*LSMLTLMTWD 507
KI ++ + ++ L L L+S + LRSL L L+AL LSM T++
Sbjct: 479 KIFLISDAISLFTSCMSLLMFLGILKSRYREEDFLRSLPTKLIVGLLALFLSMATMIV-- 536
Query: 508 SVAMS*VRPLVMLVAVLLVESLAWLRFKYFHFSYVGLG 621
V+ + L+ E ++W+ ++ + + LG
Sbjct: 537 --------TFVVTLMTLVGEKISWVSAQFMFLAVIPLG 566
>At1g47786.1 68414.m05316 acyl-protein thioesterase-related similar
to hypothetical protein GB:AAD55623 GI:5903064 from
[Arabidopsis thaliana] contains similarity to
acyl-protein thioesterase-1 [Homo sapiens]
gi|9965372|gb|AAG10063
Length = 186
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 342 PSSAVRHVGDLGNIEAIEDSGVTKVS--IQDSQISLHGPNSIIGRTLVVHADPDDLGLG 512
P++ R V LG +E + ++S +QD ++SLH I HA P+ G+G
Sbjct: 89 PTAPRRPVTILGGMETNAWFDIAEISENMQDDEVSLHHAALSIANLFSDHASPNIGGMG 147
>At5g18330.1 68418.m02157 U-box domain-containing protein weak
similarity to immediate-early fungal elicitor protein
CMPG1 [Petroselinum crispum] GI:14582198; contains Pfam
profile PF04564: U-box domain
Length = 445
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 304 ELISTLKNKIMVVPVLLYAMSATSVTLRQLKTLESLKYQ 420
E I TL NKIM+ P+L+ A+ T + LE LK++
Sbjct: 68 EFICTLSNKIMIEPMLI----ASGQTFEKSYILEWLKHE 102
>At4g33900.1 68417.m04810 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 379
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 183 SKKT-VPLTSPRSTQTALAGIVILYYVIFRV 94
SKK VP++SP T AL G V++ + I+ +
Sbjct: 90 SKKVLVPISSPNFTSAALPGFVVVGHEIYAI 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,288
Number of Sequences: 28952
Number of extensions: 284117
Number of successful extensions: 714
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -