Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K21
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20716| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_44798| Best HMM Match : rve (HMM E-Value=3.4e-33) 32 0.32
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36) 32 0.32
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 32 0.32
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27) 32 0.32
SB_1797| Best HMM Match : rve (HMM E-Value=8.5e-35) 32 0.32
SB_39899| Best HMM Match : rve (HMM E-Value=5.9e-27) 31 0.98
SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_3315| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33) 31 0.98
SB_25474| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 31 0.98
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32) 31 0.98
SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0) 29 2.3
SB_53696| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13) 28 5.2
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_54| Best HMM Match : Actin (HMM E-Value=0) 27 9.1
SB_14432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_20716| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CNATRN QY P YP+ P ER
Sbjct: 90 CNATRNASPSQYHPWAYPQAPWER 113
>SB_44798| Best HMM Match : rve (HMM E-Value=3.4e-33)
Length = 243
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CNATRN QY P YP+ P ER
Sbjct: 28 CNATRNAPPSQYHPWAYPQAPWER 51
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CNATRN QY P YP+ P ER
Sbjct: 886 CNATRNAPPSQYHPWAYPQAPWER 909
>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
Length = 877
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CNATRN QY P YP+ P ER
Sbjct: 669 CNATRNAPPSQYHPWAYPQAPWER 692
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CN TRN +QY P YP+ P ER
Sbjct: 977 CNTTRNAPPWQYHPWAYPQAPWER 1000
>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
Length = 1307
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CNATRN QY P YP+ P ER
Sbjct: 809 CNATRNAPPSQYHPWAYPQAPWER 832
>SB_1797| Best HMM Match : rve (HMM E-Value=8.5e-35)
Length = 285
Score = 32.3 bits (70), Expect = 0.32
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CNATRN QY P YP+ P ER
Sbjct: 86 CNATRNAPPSQYHPWAYPQAPWER 109
>SB_39899| Best HMM Match : rve (HMM E-Value=5.9e-27)
Length = 427
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CN TRN QY P YP+ P ER
Sbjct: 228 CNTTRNAPPSQYHPWAYPQAPWER 251
>SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CN TRN QY P YP+ P ER
Sbjct: 431 CNTTRNAPPSQYHPWAYPQAPWER 454
>SB_3315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CN TRN QY P YP+ P ER
Sbjct: 115 CNTTRNAPPSQYHPWAYPQAPWER 138
>SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)
Length = 566
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CN TRN QY P YP+ P ER
Sbjct: 311 CNTTRNAPPSQYHPWAYPQAPWER 334
>SB_25474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CN TRN QY P YP+ P ER
Sbjct: 278 CNTTRNAPPSQYHPWAYPQAPWER 301
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CN TRN QY P YP+ P ER
Sbjct: 1011 CNTTRNAPPSQYHPWAYPQAPWER 1034
>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
Length = 1086
Score = 30.7 bits (66), Expect = 0.98
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 133 CNATRNHWNYQYQPGPYPKTPEER 204
CN TRN QY P YP+ P ER
Sbjct: 827 CNTTRNAPPSQYHPWAYPQAPWER 850
>SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)
Length = 568
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = +1
Query: 163 QYQPGPYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYPKLPDIGEDSKDPHYPYDNP 342
QYQP P T + A + G E+Y E +G Y LPDI P YPY
Sbjct: 257 QYQPVP---TSYDYDAPLTEAGDLTEKYHAIREVIG--KYLTLPDIPIPPATPKYPYGTI 311
Query: 343 ELKR 354
E+ +
Sbjct: 312 EMTK 315
>SB_53696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 184 PKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYPKLPDIGE 306
P + +E AA++ G+ TP P+D + K+PDIGE
Sbjct: 9 PLSGDEMAASS---GLQARADTPMPQDSSKAFHIKVPDIGE 46
>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2070
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +3
Query: 66 VFVTEKSSVQQLSIHKKNGSSVLQ 137
++VTEK ++Q+S + +G+S+LQ
Sbjct: 1138 LYVTEKEDLEQISFDRLDGNSILQ 1161
>SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)
Length = 557
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 277 DYPK-LPDIGEDSKDP--HYPYDNPELKRNFNEPLHATAEIF 393
D+PK +P D P H P D+P++ +F+ P+ A +F
Sbjct: 301 DHPKVIPHTPTDHPKPVPHTPTDHPKVVESFDVPVEAVRRLF 342
>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
Frame = +1
Query: 244 YTPYPEDMGYGDYPKLPDIGEDS--------KDPHYPYD-----NPELKRNFN 363
+ P+ +DM YPK P++ ED + H+ +D NP L+++FN
Sbjct: 349 FLPFADDMRKLKYPKKPEVSEDQIEKAQKIIRKLHFTFDSTSFENPTLQKHFN 401
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 358 NSSSIPGYHKDNEDP-WSPHQYQVASDNHHSPYLQDRE 248
NS + GY NE WS Q + S NH SP ++ E
Sbjct: 485 NSPQMNGYSSVNEPLYWSIDQNEPTSSNHTSPLSRNHE 522
>SB_14432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 27.5 bits (58), Expect = 9.1
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Frame = +1
Query: 76 LKRALFNNSQSIRKTAALFCNATRNHWNYQYQPGPYPKTPEERAAAAK----KYGMTVEE 243
LK N + S++K + F + W Y PG KT +ER + K + VE
Sbjct: 14 LKHLAGNAAASVKKELSKFAD-----WVLSYVPGSVRKTVDERVNSLKDKVDRIFKRVER 68
Query: 244 YTPYPEDMGYGDYPKLPDI-GEDSKDP 321
+ P Y K + G++ DP
Sbjct: 69 FAPKERQTALKGYLKTHRVDGQEGYDP 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,978,736
Number of Sequences: 59808
Number of extensions: 393477
Number of successful extensions: 1206
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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