Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K20
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) 39 0.003
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 34 0.074
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0) 34 0.074
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0) 31 0.69
SB_38125| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 30 1.2
SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12) 30 1.6
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_20185| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-23) 29 2.8
SB_35675| Best HMM Match : TB (HMM E-Value=8.4) 29 3.7
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11) 29 3.7
SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16) 29 3.7
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_331| Best HMM Match : F5_F8_type_C (HMM E-Value=0.034) 28 4.8
SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 6.4
SB_32588| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21) 27 8.5
SB_11820| Best HMM Match : EGF_2 (HMM E-Value=9.8) 27 8.5
SB_372| Best HMM Match : CBM_2 (HMM E-Value=0.00043) 27 8.5
>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 802
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +2
Query: 119 CPENAHTTLNPCVPT--CADPEL---KHTSCVTAFIATCHCDSGYLFNSEG-KCVPVAEC 280
CP+ + N CV CADP++ +H T C C GY+ NS+G C + EC
Sbjct: 691 CPQGYRSDWNKCVDIDECADPQVNKCQHICNNTQASFHCECREGYILNSDGITCSDIDEC 750
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 34.3 bits (75), Expect = 0.074
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +2
Query: 116 SCPENA--HTTLNPCVPTCADPELKHTSCVTAFIATCHCDSGYL--FNSEGK--CVPVAE 277
+CPENA + C TC DP ++ +C + C C ++ N+ GK C+ E
Sbjct: 179 TCPENAVFKYCTSACPETCHDPPGRNKTCSMRCVEGCECKEEFVQRVNAVGKVQCIKRKE 238
Query: 278 C 280
C
Sbjct: 239 C 239
>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 165
Score = 34.3 bits (75), Expect = 0.074
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 215 TCHCDSGYLFNSEGKCVPVAEC 280
TC C GY NS+GKC V EC
Sbjct: 26 TCQCAEGYERNSQGKCADVNEC 47
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 215 TCHCDSGYLFNSEGKCVPVAEC 280
TC C GY +S+GKC V EC
Sbjct: 483 TCQCAEGYERDSQGKCADVNEC 504
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 113 KSCPENAHTTLNPCVPTCADPELKHTSCVTA-FIATCHCDS-GYLFNSEGKCVPVAEC 280
K C + T C TC D +C + + C+C+ G L N+E KCV +C
Sbjct: 1124 KQCNRDPLTRKLRCPSTCDDLANVTDTCPSRRCVEGCYCEKEGELMNNEHKCVDKTQC 1181
>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 541
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +2
Query: 212 ATCHCDSGYLFNSEGK---CVPVAEC 280
A C C +GY N+EGK CV V EC
Sbjct: 60 ARCECVAGYALNTEGKITRCVDVNEC 85
>SB_38125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 30.7 bits (66), Expect = 0.91
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -3
Query: 533 SRYVSLNVSIFNFNFWIYVLLLRC--MDELTAHL 438
SRY+S+ +S +++ W+ V +RC D LTA L
Sbjct: 304 SRYISIPISNYDYKKWVKVTGVRCTKQDSLTASL 337
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 218 CHCDSGYLFNSEGK-CVPVAEC*I*RGG 298
C CD GY S+GK C + EC I +GG
Sbjct: 378 CACDYGYRLLSDGKTCQDIDECAINKGG 405
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +2
Query: 143 LNPCVPTCADPELKHTSCVTAFIATCHCDSGYLFNSEGKCVPVAEC 280
++ C + +H T +C C GY + +CV V EC
Sbjct: 561 IDECARNHGKGDCEHLCTNTVGSFSCSCHQGYRLKGKHQCVDVDEC 606
>SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 143 LNPCVPTCADPELKHTSCVTAFIA-TCHCDSGYLFNS-EGKCVPVAEC 280
++ C+ + PE H+ C TC C+SGYL + + C+ V EC
Sbjct: 285 MDECLVPGSCPE--HSVCTNHVKGFTCECESGYLMDDLKAHCIDVDEC 330
>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3474
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 209 IATCHCDSGYLFNSEGKCVPVAEC 280
I C C GY S+G+CV + EC
Sbjct: 292 IYQCTCFEGYHLTSDGQCVDINEC 315
>SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12)
Length = 452
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +2
Query: 110 EKSCPENAHTTL---NPC-VPTCADPELKHTSCVTAFIATCH 223
++ CP A T + NPC V +C P + SC +F TCH
Sbjct: 157 DEDCPPGAPTAMCSSNPCDVASC--PGHPYASCKPSFCGTCH 196
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 215 TCHCDSGYLF-NSEGKCVPVAEC 280
TC C GY F NS +C+ + EC
Sbjct: 2128 TCDCPRGYTFDNSSRRCIDINEC 2150
>SB_20185| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-23)
Length = 470
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 325 KYKSKSVEIASASYSTFGNGHAFSLRVEEVSRITVAGCDESRHATGVFQFRV 170
KY + V++ A Y+ F A S RI + GC A G+ FR+
Sbjct: 163 KYDTSKVDLTPAVYARFIRIAAISWETHVCMRIELYGCRACGDALGLEDFRI 214
>SB_35675| Best HMM Match : TB (HMM E-Value=8.4)
Length = 251
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 514 MYLYLTSIFGYMFYCLDVWTS*QPT 440
M LY + IF Y+ YC+ VW S P+
Sbjct: 108 MTLYYSLIFPYLQYCICVWGSTYPS 132
>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
Length = 1477
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +2
Query: 56 IMFLLVSLMALAAS-KSLFEKSCPENAHTTLNPCVPTCADPELKHTSCVTAFIATCHCDS 232
I F SL +A S +S + NA T+ C TC + H CV TC CD
Sbjct: 1311 ITFSPFSLRVVAMSVESTNGDTATSNATITITTCTYTCENNCSNHGQCVAR--DTCVCDQ 1368
Query: 233 GYLFN 247
+ N
Sbjct: 1369 KFSGN 1373
>SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)
Length = 748
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 95 SKSLFEKSCPENAHTTLNPCVPTCADPELKHTSCVTAFI 211
S +L KS PEN+ T TC DPE + +C A +
Sbjct: 656 SITLTNKSIPENSPTGTLVGTLTCEDPESPNDTCTFAIM 694
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 131 AHTTLNPC---VPTCADPELKHTSCV-TAFIATCHCDSGYLFNSEGKCVPVAEC 280
A T ++ C V TCA L ++C T TC C++GY N E C + EC
Sbjct: 717 ACTDIDECTDGVHTCA---LNGSTCTNTVGSYTCACNAGYTGNGE-TCADIDEC 766
>SB_331| Best HMM Match : F5_F8_type_C (HMM E-Value=0.034)
Length = 302
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 291 RHIQHSATGTHFPSELKRYPESQWQVAMKAVTQLVCFNSGSAQ 163
R +QH+ G+H + RY +A++ V C + G+A+
Sbjct: 217 RTVQHAHCGSHGTTRTLRYARYNTHIAVRTVQHAHCGSHGTAR 259
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 291 RHIQHSATGTHFPSELKRYPESQWQVAMKAVTQLVCFNSGSAQ 163
R +QH+ G+H + RY +A++ V C G+A+
Sbjct: 245 RTVQHAHCGSHGTARTLRYARYNTHIAVRTVQHAHCGTQGTAR 287
>SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1678
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +2
Query: 188 TSCVTAFIA-TCHCDSGYLFNSEGKCVPVAEC 280
+ C+ + + C C GY N CV V EC
Sbjct: 800 SQCINTYGSYKCSCKRGYAHNDSNVCVDVNEC 831
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 188 TSCVTAFIATCHCDSGYLFNSEGK-CVPVAEC 280
TS A + C C GYL S+G+ C V EC
Sbjct: 2534 TSTCGAGLFRCSCRPGYLLMSDGRSCQDVDEC 2565
>SB_32588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 212 ATCHCDSGYLFNSEGKCVPVAE 277
+T D GYLF S G+ +PV++
Sbjct: 584 STLESDEGYLFGSNGQILPVSQ 605
>SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21)
Length = 564
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 143 LNPCVPTCADPELKHTSCVTAFIATCHCDSGYLFNSEGKCVPVAEC 280
+N CV T + + K + ++ C CD G+ NS+ K V C
Sbjct: 387 VNECVETAHNCQQKCNNDYGSY--HCSCDPGFQLNSDKKTCSVIRC 430
>SB_11820| Best HMM Match : EGF_2 (HMM E-Value=9.8)
Length = 197
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 212 ATCHCDSGYLFNSEGKCVPVAE 277
+T D GYLF S G+ +PV++
Sbjct: 47 STLESDEGYLFGSNGQILPVSQ 68
>SB_372| Best HMM Match : CBM_2 (HMM E-Value=0.00043)
Length = 630
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 325 KYKSKSVEIASASYSTFG-NGHAFSLRVEEVSRITVAGCDESR-HATGVFQFRVCTGRHA 152
K KS S + + S FG N H V E+ V G + R H T F R T RHA
Sbjct: 374 KIKSTSEDKKTFVISNFGWNTHLNEGSVLEMPFNGVKGANGGRPHVTATFHARESTCRHA 433
Query: 151 GVQCRVSIFR 122
+ V + R
Sbjct: 434 SLALAVVLQR 443
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,767,498
Number of Sequences: 59808
Number of extensions: 354518
Number of successful extensions: 923
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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