Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K20
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14800.1 68415.m01677 hypothetical protein                          28   4.0  
At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR...    28   5.2  
At2g43240.1 68415.m05374 nucleotide-sugar transporter family pro...    27   9.1  
At1g71960.1 68414.m08318 ABC transporter family protein similar ...    27   9.1  
At1g69935.1 68414.m08048 expressed protein                             27   9.1  

>At2g14800.1 68415.m01677 hypothetical protein
          Length = 580

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 127 FRTRFLEQALTGCESHQRHEQ 65
           F+T   E+A+TG E  Q HEQ
Sbjct: 450 FKTELYEEAVTGTEHFQHHEQ 470


>At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1008

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 116  SCPENAHTTLNPCVPTCADPELKHT 190
            S PEN H   N   P C  PE +H+
Sbjct: 941  SLPENHHNDPNILAPNCGCPETEHS 965


>At2g43240.1 68415.m05374 nucleotide-sugar transporter family
           protein weak similarity to SP|P78382 CMP-sialic acid
           transporter {Homo sapiens}; contains Pfam profile
           PF04142: Nucleotide-sugar transporter
          Length = 787

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = +2

Query: 56  IMFLLVSLMALAASKSLFEKSCPENAHTTLNPCVPTCADPELKHTSCVTAFIATCHCDSG 235
           ++F +V L+  AA  ++   + P   +   N    T       H S V A   +C+C+  
Sbjct: 83  VIFAMVMLLFQAARNNML-LAVPAGLYAINNYLKFTMQFHTAIHFSAVPAIFQSCYCEDA 141

Query: 236 YLFNSEGKC 262
               S G C
Sbjct: 142 QQSKSSGDC 150


>At1g71960.1 68414.m08318 ABC transporter family protein similar to
           breast cancer resistance protein GB:AAC97367 from [Homo
           sapiens]
          Length = 662

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 513 CIYI*LQFLDICFIA*MYGRANSPLGVK*LL 421
           C  I L+F+D+C+   ++G +N    +K LL
Sbjct: 35  CFPITLKFVDVCYRVKIHGMSNDSCNIKKLL 65


>At1g69935.1 68414.m08048 expressed protein
          Length = 192

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 124 RTRFLEQALTGCESHQRHEQKHDEVMFGGXXN 29
           R R L ++L    SH R   + D+  FGG  N
Sbjct: 42  RFRRLNRSLASSSSHSRRRYESDDRFFGGGDN 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,287
Number of Sequences: 28952
Number of extensions: 229700
Number of successful extensions: 536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)