Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K17
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 146 1e-36
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 146 1e-36
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 27 2.4
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 3.2
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 4.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 9.6
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 9.6
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 25 9.6
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 9.6
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 9.6
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 9.6
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 146 bits (355), Expect = 1e-36
Identities = 67/127 (52%), Positives = 88/127 (69%)
Frame = +3
Query: 12 LANTNSXQNIRKLIKDGLVIKXPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQ 191
++N NS QNIRKL+KDGLVI+ P +HSR R+RK A+R GRH G+GKR+GTA ARMP
Sbjct: 32 ISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPS 91
Query: 192 KELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKAR 371
+W + KID+HLYH+LY++AKGN FK+KR L+E+I R KAE R
Sbjct: 92 TVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANR 151
Query: 372 TKMLSDQ 392
TK++ +Q
Sbjct: 152 TKLIQEQ 158
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 146 bits (355), Expect = 1e-36
Identities = 67/127 (52%), Positives = 88/127 (69%)
Frame = +3
Query: 12 LANTNSXQNIRKLIKDGLVIKXPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQ 191
++N NS QN+RKLIKDGLVI+ P +HSR R+RK A+R GRH G+GKR+GTA ARMP
Sbjct: 32 ISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPS 91
Query: 192 KELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKAR 371
+W + KID+HLYH+LY++AKGN FK+KR L+E+I R KAE R
Sbjct: 92 AVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANR 151
Query: 372 TKMLSDQ 392
TK++ +Q
Sbjct: 152 TKLIQEQ 158
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = -2
Query: 467 FLLLGGNT-----FLAALACLLYFIAAGL 396
F+ GGN FL A C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 198 VPSVAYAHWQYLFSYQS 148
+PSV YA WQ L Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 358 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 266
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 437 AALACLLYFIAAGLSLVAKHLRPGLLSLLP 348
A L CLL IAA L+ H+ P L LLP
Sbjct: 626 AKLLCLL--IAAAPRLIESHVEPILQILLP 653
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 398 LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 288
LSL K + + +LL + + H HTLV E +TL+L V
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 521 LLLSGKRGFVFSSEGLQQFLLLGGNTFLAALACLLY 414
+L +GK ++ GL + LL GG +F + CL +
Sbjct: 70 ILNNGKAYWLAMLVGLLECLLSGGKSFAKVINCLRF 105
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 161 SLTKATVTTLSTCLCVFADTGAGVDCYRXLDDETILDQL 45
++ K +TTL C D V C ++ETI DQL
Sbjct: 1013 NIVKVFLTTLGAC----GDVARNVTCSSTPNNETIHDQL 1047
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 162 FSYQSHSDDPFYVPLCFCGHGR 97
FS + +D+P Y P+ CG G+
Sbjct: 37 FSQCAITDEPLYPPIVSCGLGK 58
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 500 GFVFSSEGLQQFLLLGGNTFLAA 432
G VFS + L +F+ GGN F+ A
Sbjct: 83 GPVFSPKSLLEFVQSGGNLFVVA 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,997
Number of Sequences: 5004
Number of extensions: 39122
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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