Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K17
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 161 3e-40
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 161 3e-40
07_03_1639 + 28305801-28305958,28306240-28306249 33 0.15
03_02_0050 + 5272471-5274861 30 1.0
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 28 4.2
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 28 4.2
02_02_0125 - 7026037-7027377 28 5.6
02_05_0067 + 25557975-25558553 27 7.4
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106... 27 7.4
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 27 9.8
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 161 bits (391), Expect = 3e-40
Identities = 74/127 (58%), Positives = 90/127 (70%)
Frame = +3
Query: 12 LANTNSXQNIRKLIKDGLVIKXPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQ 191
++ NS QNIRKL+KDG +IK P +HSR+R R+ EA++KGRH G+GKRRGT AR+P
Sbjct: 32 ISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPT 91
Query: 192 KELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKAR 371
K LW AKKID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR
Sbjct: 92 KILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAR 151
Query: 372 TKMLSDQ 392
K LSDQ
Sbjct: 152 EKTLSDQ 158
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 161 bits (391), Expect = 3e-40
Identities = 74/127 (58%), Positives = 90/127 (70%)
Frame = +3
Query: 12 LANTNSXQNIRKLIKDGLVIKXPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQ 191
++ NS QNIRKL+KDG +IK P +HSR+R R+ EA++KGRH G+GKRRGT AR+P
Sbjct: 32 ISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPT 91
Query: 192 KELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKAR 371
K LW AKKID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR
Sbjct: 92 KILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAR 151
Query: 372 TKMLSDQ 392
K LSDQ
Sbjct: 152 EKTLSDQ 158
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 291 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 392
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>03_02_0050 + 5272471-5274861
Length = 796
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 464 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 306
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 48 LIKDGLVIKXPVAVHSRARVRKNTEARRKGRHC---GFGKRRGTANAR 182
L KDG ++ + +RA R +T+A R+ HC G+G RR + R
Sbjct: 172 LPKDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVRRSLSGGR 219
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 39 IRKLIKD-GLVIKXPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 173
+ L +D G+ +K H + + R+GRH G+G+RR +A
Sbjct: 204 VSPLARDWGITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
>02_02_0125 - 7026037-7027377
Length = 446
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 173 GSTSSLTKATVTTLSTCLCVFADTGAGVDCYRXLDDETILDQLTDVLXGVGVCE 12
G +S++ +T T+ ST + G G+D R +D+ + L VG CE
Sbjct: 39 GLRASVSASTATS-STSMAQLVAAGGGIDELRLVDERAAVAALQQQQLPVGGCE 91
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 327 HACS*THYPSPSCRVSGIDACQSSW 253
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
>02_03_0297 -
17408902-17409045,17409134-17409304,17410563-17410664,
17412605-17412718,17413095-17413178,17413669-17413808,
17414429-17414560,17415430-17415618,17415736-17415801,
17415905-17415938
Length = 391
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 438 RGACVPPLLYCGGP 397
+GACV P+ YCG P
Sbjct: 152 KGACVDPVAYCGTP 165
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 15 ANTNSXQNIRKLIKD-GLVIKX-PVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 176
AN ++ + + +L D GL+ + P+ V S RVR + K GK R TAN
Sbjct: 201 ANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,951
Number of Sequences: 37544
Number of extensions: 305266
Number of successful extensions: 885
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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