Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K17
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   158   2e-39
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    33   0.18 
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   3.8  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   6.7  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  158 bits (384), Expect = 2e-39
 Identities = 72/127 (56%), Positives = 90/127 (70%)
 Frame = +3

Query: 12  LANTNSXQNIRKLIKDGLVIKXPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQ 191
           ++  NS Q+IR+L+ DGL+I+ PV VHSR R R+  EARRKGRH G+GKRRGTANARMP+
Sbjct: 32  ISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPE 91

Query: 192 KELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKAR 371
           K LW                AKK+D+HLYH LY++AKGN FKNK+ L+EYI +KK E  R
Sbjct: 92  KTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKR 151

Query: 372 TKMLSDQ 392
            K L+DQ
Sbjct: 152 AKQLADQ 158


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 9    SLANTNSXQNIRKLIKDGLVIKXPVAVHSRARVRKNTEARRKGRHCG 149
            S ++T+S +N+R L+ D   +K  V  H     R ++E R+K R  G
Sbjct: 1053 SSSDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 418 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 522
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 465 PPSWRQYVPRGACVPPL 415
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 439 RNVLPPRRRNCCRPSLEKTKPRLP 510
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 139 RPFLRASVFLRTRAREWTATGXLMTRPSLISLRMF 35
           RP   AS F + RA  W A+  ++  P+L+ ++ F
Sbjct: 262 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF 296


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 139 RPFLRASVFLRTRAREWTATGXLMTRPSLISLRMF 35
           RP   AS F + RA  W A+  ++  P+L+ ++ F
Sbjct: 399 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF 433


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 255 WQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSHSD-DPFYVPLCFCGHGR 97
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,392,973
Number of Sequences: 27780
Number of extensions: 237187
Number of successful extensions: 650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)