Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K17
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   160   5e-40
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   159   1e-39
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...   157   5e-39
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    46   2e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    29   2.7  
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila...    28   4.7  
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    28   4.7  
At5g67310.1 68418.m08488 cytochrome P450 family protein                27   6.2  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    27   6.2  
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    27   6.2  

>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  160 bits (389), Expect = 5e-40
 Identities = 74/130 (56%), Positives = 90/130 (69%)
 Frame = +3

Query: 3   SMSLANTNSXQNIRKLIKDGLVIKXPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANAR 182
           S  ++  NS QNIRKL+KDG +I+ P  +HSR+R R   EA+RKGRH G+GKR+GT  AR
Sbjct: 29  SGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREAR 88

Query: 183 MPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAE 362
           +P K LW                +KKIDRH+YH +YMK KGNVFKNKRVLME IH+ KAE
Sbjct: 89  LPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAE 148

Query: 363 KARTKMLSDQ 392
           KAR K L+DQ
Sbjct: 149 KAREKTLADQ 158


>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score =  159 bits (386), Expect = 1e-39
 Identities = 73/127 (57%), Positives = 88/127 (69%)
 Frame = +3

Query: 12  LANTNSXQNIRKLIKDGLVIKXPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQ 191
           ++  NS QNIRKL+KDG +I+ P  +HSR+R R+   A+RKGRH G+GKR+GT  AR+P 
Sbjct: 32  ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPT 91

Query: 192 KELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKAR 371
           K LW                 KKIDRH+YH +YMK KGNVFKNKRVLME IH+ KAEKAR
Sbjct: 92  KVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAR 151

Query: 372 TKMLSDQ 392
            K LSDQ
Sbjct: 152 EKTLSDQ 158


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score =  157 bits (381), Expect = 5e-39
 Identities = 72/130 (55%), Positives = 88/130 (67%)
 Frame = +3

Query: 3   SMSLANTNSXQNIRKLIKDGLVIKXPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANAR 182
           S  ++  NS QNIRKL+KDG +I+ P  +HSR+R RK   A+ KGRH G+GKR+GT  AR
Sbjct: 29  SSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREAR 88

Query: 183 MPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAE 362
           +P K LW                 KKID+H+YH +YM+ KGNVFKNKRVLME IH+ KAE
Sbjct: 89  LPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAE 148

Query: 363 KARTKMLSDQ 392
           KAR K LSDQ
Sbjct: 149 KAREKTLSDQ 158


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +3

Query: 255 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 365
           KKID+ +Y H ++MK KG V+KNK VLME +H+   E+
Sbjct: 29  KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -3

Query: 391  WSLSIFVLAFSAFFLWMYSMSTRL 320
            W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400


>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
           to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
           {Mus musculus}
          Length = 865

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 57  DGLVIKXPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 170
           D L++      H R+ VR+    R +GR  G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1663

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 410  IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 294
            IA  L    KHL+P L+SL+P  V H EH L    +  RL
Sbjct: 974  IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013


>At5g67310.1 68418.m08488 cytochrome P450 family protein
          Length = 507

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 309 HYPSPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 208
           H  S  C V+G D  + +W F  + AI  +P V+
Sbjct: 382 HASSTDCEVAGFDIPRRTWLFINAWAIQRDPNVW 415


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 93  SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 200
           SR+R R  + +R +GR     + R  + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 252 AKKIDRHLYHSLYMKAKGNVFKNKRVL 332
           A K+++ +Y   Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,813,343
Number of Sequences: 28952
Number of extensions: 223269
Number of successful extensions: 622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)