Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K16
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)                 64   1e-10
SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    63   2e-10
SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)                  36   0.028
SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.037
SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)                 36   0.037
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)                  36   0.037
SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.048
SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.34 
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    30   2.4  
SB_34545| Best HMM Match : RCC1 (HMM E-Value=0.027)                    28   7.3  
SB_34431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_30373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
          Length = 456

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 1/152 (0%)
 Frame = +3

Query: 324 TASVAINIVGHGCVIGFPAILIPSLR-KSDSHIHLTRSEESWIASVVGFALIVGNFIITL 500
           T   A+  +  G  +G+ +     L  K+ + ++L   E +W  S++    ++G  I   
Sbjct: 44  TFIAALGPLSFGYCMGYSSAATTQLENKNATDLYLNADEITWFGSLLNIGAMLGGPIQGF 103

Query: 501 ILDNIGRKKSHILTIFPNLAGWFLFLLVNNFPGLMAARFLQGIAMGMLGPLGSIIIGEMT 680
           ++D IGRK + ILT  P  +GW L     N   L A RF+ G+ +GM      + I E  
Sbjct: 104 LIDLIGRKFALILTSVPFCSGWLLIGFGKNAAMLNAGRFMSGLGVGMASLNVPVYISETA 163

Query: 681 DPKSRGVFXXXXXXXXXXXXXXXHAXGTCFTW 776
              +RG                 +A G  F W
Sbjct: 164 SFSNRGAMGSINQLGITAGILISYAIGYAFDW 195


>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 1/157 (0%)
 Frame = +3

Query: 309 RQCFVTASVAINIVGHGCVIGFPAILIPSL-RKSDSHIHLTRSEESWIASVVGFALIVGN 485
           R    T   A+  +  G  +G+ +  +  L  +S   + LT S+ SW +S+V    I+G 
Sbjct: 43  RMVLATFIAALGPLSFGFCLGYSSSALEDLIAESKESVKLTVSQGSWFSSLVTLGAILGA 102

Query: 486 FIITLILDNIGRKKSHILTIFPNLAGWFLFLLVNNFPGLMAARFLQGIAMGMLGPLGSII 665
            +    L+  GRK + +    P   GW L    N+   L   RF+ G+A+GM+     + 
Sbjct: 103 PLGGWTLEYFGRKGTIMACAVPFEVGWMLIAYANSHYMLYIGRFITGLAVGMVSLTVPVY 162

Query: 666 IGEMTDPKSRGVFXXXXXXXXXXXXXXXHAXGTCFTW 776
           I E++ P  RG+                ++ G    W
Sbjct: 163 IAEISSPSLRGMLGSVNQLAVTMGLLLAYSMGVVLKW 199


>SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)
          Length = 419

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = +3

Query: 324 TASVAINIVGHG-CVIGFPAILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFI--I 494
           TA + + +V  G  ++G   +LI S R+S S+ H+TR + S     VGF  I G  I   
Sbjct: 144 TAQLLVGVVAVGDLLMGVYLLLITSTRRSVSYEHMTRLQRSHFCYFVGFVSIFGQGISAF 203

Query: 495 TLILDNIGRKKSHILTIFPNLA 560
           +  +  I R  + +  + P++A
Sbjct: 204 SSFIVTIERYLAVVFCLQPDIA 225


>SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 324 TASVAINIVGHG-CVIGFPAILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFI 491
           TA + + +V  G  ++G   +LI S R+S S+ H+TR + S     VGF  I G  I
Sbjct: 342 TAQLLVGVVAVGDLLMGVYLLLITSTRRSVSYEHMTRLQRSHFCYFVGFVSIFGQGI 398


>SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)
          Length = 646

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 324 TASVAINIVGHG-CVIGFPAILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFI 491
           TA + + +V  G  ++G   +LI S R+S S+ H+TR + S     VGF  I G  I
Sbjct: 263 TAQLLVGVVAVGDLLMGVYLLLITSTRRSVSYEHMTRLQRSHFCYFVGFVSIFGQGI 319



 Score = 35.9 bits (79), Expect = 0.037
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 324 TASVAINIVGHG-CVIGFPAILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFI 491
           TA + + +V  G  ++G   +LI S R+S S+ H+TR + S     VGF  I G  I
Sbjct: 385 TAQLLVGVVAVGDLLMGVYLLLITSTRRSVSYEHMTRLQRSHFCYFVGFVSIFGQGI 441


>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
          Length = 447

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 25/73 (34%), Positives = 34/73 (46%)
 Frame = +2

Query: 386 DSESPEIRFPHPSYQI*GVMDSICRRFRPHRGKLHNHINSGQHRQEEVSHPHYLPKPRRL 565
           D     + FP+P+ +I  + D    R  PHR      + SG   Q  VSH   LPKP++ 
Sbjct: 281 DDLDGRLNFPNPTLRIHALPDVRSYRVTPHRVTPQAMVTSGPLYQ-LVSHSSTLPKPKQH 339

Query: 566 VPVSTSQQLSWSH 604
             +  S   SWSH
Sbjct: 340 SRIIWS--CSWSH 350


>SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 35.5 bits (78), Expect = 0.048
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 324 TASVAINIVGHG-CVIGFPAILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFI 491
           TA + + +V  G  ++G   + I S R+S S+ H+TR + S     VGF  I G  I
Sbjct: 225 TAQLLVGVVAVGDLLMGIYLLFITSTRRSVSYEHMTRLQRSHFCYFVGFVFIFGQGI 281


>SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +2

Query: 392 ESPEIRFPHPSYQI*GVMDSICRRFRPHRGKLHNHINSGQHRQEEVSHPHYLPKPR-RLV 568
           +SP    P+P Y       +I R+  PH     +H+   Q R +       +PKP     
Sbjct: 254 QSPRRLIPYPGY-------NIMRQNIPHYA---SHVTPMQTRYQATYRKTQIPKPYWYTA 303

Query: 569 PVS-TSQQLSWSHGGQVPPRNRYGHAWTF 652
           PV   + Q S    G     N YGHAW +
Sbjct: 304 PVKPAANQFSARRSGLPYAANLYGHAWAY 332


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +2

Query: 437  GVMDSICRRFRPHRGKLHNHINSGQHRQEEVSHPHYLPKPRRLVPVSTS 583
            G+     RR R  RGK  NHI   + R       H+  KP +  P S S
Sbjct: 2501 GLKKRFARRLRFVRGKRGNHIPKARGRYMINKESHFTAKPGQACPQSIS 2549


>SB_34545| Best HMM Match : RCC1 (HMM E-Value=0.027)
          Length = 230

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 480 GNFIITLILDNIGRKKSHILTIFPNLAGWFLF 575
           GN + TLI+ NI  +K+H L + P+    + F
Sbjct: 13  GNLVTTLIIMNIHLEKAHTLALVPSSGRVYTF 44


>SB_34431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 433 DLVRWMWESDFRRLGINIAGKPMTQPWPTMLM 338
           D+   +W S FR+ G+ I    +T+ W T LM
Sbjct: 46  DIAVRIWVSQFRQDGMKILNSLITRDWTTSLM 77


>SB_30373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +2

Query: 329 QRRHQHRGPWLRH--RFPGYIDSESPEIRFPHPSYQI*GVMDSICRRFRPHRGKLHNHIN 502
           Q R + R  +L H  + PGY+D       +     Q+ G +D        H  +L  +++
Sbjct: 180 QERFKERDSYLDHGRQLPGYLDHGRQLPGYLDHGRQLPGYLD--------HGRQLPGYLD 231

Query: 503 SGQHRQEEVSHPHYLPKPRRLVPVSTSQQLSW-SHG 607
            G+     + H   LP+  RL+P +     S+  HG
Sbjct: 232 HGRQLPGYLDHGRQLPEYSRLIPNNVCFPFSYLDHG 267


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +2

Query: 359  LRHRFPGYIDSESPEIRFPHPSYQI*GVMDSICRRFRPHRGKLHNHINSGQHRQEEVSHP 538
            + H   G I+S    +   H  YQ+   + ++  R   HR +L  H+ +  HR + + H 
Sbjct: 1043 MEHCTRGGINSSPNPVTMTH-RYQLLPHLSAMTHRAMTHRYQLLPHLRAMTHRYQLLPHF 1101

Query: 539  HYLPKPRRLVP 571
            + +    +LVP
Sbjct: 1102 NAMTHRYQLVP 1112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,865,482
Number of Sequences: 59808
Number of extensions: 485737
Number of successful extensions: 1180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)