Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K15
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 33 0.069
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 32 0.12
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 29 0.85
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 28 1.5
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 28 2.0
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 4.5
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 27 4.5
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 6.0
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 32.7 bits (71), Expect = 0.069
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +3
Query: 405 EAYNFKLFIKHSHDLLNERNLLKRIYFSDLNDIKVQTGILDDKRNVLNSITLTDLIQ--- 575
EA++F + +H L+N ++ R++FS K+Q+ I RN+L+ + + I
Sbjct: 341 EAFSFSGYGEHGRFLINHEHMRLRVFFSSCCS-KIQSEIYSTNRNLLSVLQTVEQISKEV 399
Query: 576 TKNNCISYNDILIRKLCHDVEKDFD 650
K S N LIR + K D
Sbjct: 400 DKEYFSSTNHQLIRSEIGEYCKTLD 424
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 31.9 bits (69), Expect = 0.12
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = +3
Query: 507 VQTGILDDKRNVLNSITLTDLIQTKNNCISYNDILIRKLCHDV 635
+ ++ ++RNVLNS+ T+++ N IS+++IL+ + H +
Sbjct: 1612 IDVNVVKERRNVLNSL-CTEIMTLPGNVISFSNILMLVVLHKI 1653
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.85
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 811 IGFXHILYSISTFSCFKISFLCFSNFNGFSDSFTISVSLWK 689
I F H S S+ C+ + L FSNFN +S + +V+ ++
Sbjct: 3 IRFTHCFTSSSSLPCYILRHLPFSNFNRYSTASHDNVNAFR 43
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 414 NFKLFIKHSHDLLNERNLLKRIYFSDLNDIKVQTGIL 524
+F I HDLL+ +NLL FS K+ GIL
Sbjct: 600 SFPFDINRIHDLLSHKNLLSLKKFSRQQQTKIILGIL 636
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 27.9 bits (59), Expect = 2.0
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +3
Query: 336 NIPINKNDQLPNKICLDCLRQLREA--YNFKLFIKHSHDLLNERNLLKRIYFSDLNDIKV 509
++ N +D P ++ LD ++ E Y F+ F+K+ + L N +L K + + +
Sbjct: 92 SLSCNHSDWSPEELSLDTVQVAAEDSFYEFQRFLKNPNCLRNHHHLCKSVKVVGEHSVIY 151
Query: 510 QTGILDDKRNVL--NSITLTDLIQTKNNCI 593
+ N L NS+ + DL KNN +
Sbjct: 152 VSNNSIRMENTLHDNSVQIIDL---KNNIL 178
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 4.5
Identities = 25/107 (23%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Frame = +3
Query: 300 ETTFNNMITSVANIP--INKNDQLPNKI-CLDCLRQLREA---YNFKLFIKHSHDLLNER 461
ET N + + ++I ++K +L K+ L+C ++++ Y +K + + L+E+
Sbjct: 529 ETLVNKELANFSSIKEAVSKTLELREKVRALECDVEIQKQTVQYQISNAVKENSNTLSEQ 588
Query: 462 NLLKRIYFSDLNDIKVQTGILDDKRNVLNSITLTDLIQTKNNCISYN 602
+K + S+LN K++ L ++RN+L + T ++++ +S+N
Sbjct: 589 --IKNLE-SELNSSKIKNESLLNERNLLKEMLAT----SRSSILSHN 628
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 438 SHDLLNERNLLKRIYFSDLNDI---KVQTGILDDKRNVLNSIT 557
+ LLNERNLLK + + + I G +DDK ++ T
Sbjct: 603 NESLLNERNLLKEMLATSRSSILSHNSSAGNIDDKMKSIDEST 645
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 309 FNNMITSVANIPINKNDQLPNKICLDCLRQLREAYN 416
FN MI S+ +IP + DQ + CL ++ +R+ Y+
Sbjct: 255 FNAMIQSLGSIPPSNYDQ-ELEHCLQAVKDIRKRYS 289
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 585 NCISYNDILIRKLCHDVEKDFDALD 659
NC+ D++ KLC ++ + FD +D
Sbjct: 894 NCLRLADVVFMKLCVNIWERFDFID 918
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,525
Number of Sequences: 5004
Number of extensions: 60140
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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