Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K15
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 38 0.014
11_08_0040 + 27891797-27891823,27891934-27892091,27892169-278924... 32 0.51
11_01_0036 + 268028-268168,268734-268839,268920-269031,269126-26... 32 0.51
10_08_0089 + 14741715-14742332,14742543-14743004 31 0.90
07_03_1152 + 24392765-24392908,24393682-24393899,24394340-243944... 31 1.2
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 31 1.6
01_06_0779 - 31931893-31933317 31 1.6
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 29 4.8
09_02_0037 + 3251066-3251086,3251143-3251151,3251249-3251436,325... 29 4.8
10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886 28 8.4
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042 28 8.4
>10_08_0789 +
20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 37.5 bits (83), Expect = 0.014
Identities = 24/61 (39%), Positives = 33/61 (54%)
Frame = +3
Query: 462 NLLKRIYFSDLNDIKVQTGILDDKRNVLNSITLTDLIQTKNNCISYNDILIRKLCHDVEK 641
NLLK + D+ V GIL KR + S+ DL QTKN+C++ D L+ +L K
Sbjct: 609 NLLKDRNLKEY-DVHVAFGILSGKRETI-SVLAKDLRQTKNHCVTALDDLLTRLDLPFNK 666
Query: 642 D 644
D
Sbjct: 667 D 667
>11_08_0040 +
27891797-27891823,27891934-27892091,27892169-27892463,
27892548-27892607,27892686-27893036
Length = 296
Score = 32.3 bits (70), Expect = 0.51
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 279 SIFDSDGETTFNNMITSVANIPINKNDQLPNKICLDCLRQLREAYNFKL 425
+IFD ++ ++S+ N+ KND++PN I C +QL + FKL
Sbjct: 79 TIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQLCGKQL--IFKFKL 125
>11_01_0036 +
268028-268168,268734-268839,268920-269031,269126-269241,
269321-269399,269476-269614,269689-269747,269924-270218,
270303-270362,270502-270933
Length = 512
Score = 32.3 bits (70), Expect = 0.51
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 279 SIFDSDGETTFNNMITSVANIPINKNDQLPNKICLDCLRQLREAYNFKL 425
+IFD ++ ++S+ N+ KND++PN I C +QL + FKL
Sbjct: 268 TIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQLCGKQL--IFKFKL 314
>10_08_0089 + 14741715-14742332,14742543-14743004
Length = 359
Score = 31.5 bits (68), Expect = 0.90
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -3
Query: 786 QFQLFHASKFPSYVFLISMVSQIHLLYQYHCGNLQRHCLHF 664
+ +L + K SY+ + ++ + + L Q+HC L++ C HF
Sbjct: 275 RLKLIYEEKLCSYISVDAVSNILALADQHHCDGLKKACFHF 315
>07_03_1152 +
24392765-24392908,24393682-24393899,24394340-24394454,
24394605-24394694,24394857-24395015,24395462-24395581,
24396173-24396283,24396531-24396615,24397439-24397575
Length = 392
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = +3
Query: 354 NDQLPNKICLDCLRQLREAYNFKLFIKHSHDLLNERNLLKRIYFSD---LNDIKVQTGIL 524
+DQL + I LD + + +A NF+L I + + +I F+D LN I + G L
Sbjct: 145 DDQLESSIKLDSIITVIDAKNFRLQIDEHNKSSSFPEAFHQIAFADVVILNKIDLVEGSL 204
Query: 525 DDKRNVLNSI-TLTDLIQTKNNCISYNDI 608
+D ++ + L ++Q+ + N I
Sbjct: 205 EDLERQIHEVNALVTVVQSVRCQVDLNKI 233
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 286 NMER*FFLDFKQILH-LSISIKQCFLYL 206
++ER F FKQI + +S+ +K CFLYL
Sbjct: 343 SLEREVFSSFKQIYYDMSLMLKSCFLYL 370
>01_06_0779 - 31931893-31933317
Length = 474
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 465 LLKRIYFSDLNDIKVQTGILDDKRNVLNSITLTDLIQTKNNCISYNDILIRKLCHDVEKD 644
LL R S +D + G +K+ N I + +I + + ++ DI+ R D+ K
Sbjct: 290 LLARKEASQQHDDEEDDGFAREKKKRSNVIMSSPVIDVRPSSMNAFDIISRSRGLDLSKM 349
Query: 645 FDALDQRNE 671
FDA ++R+E
Sbjct: 350 FDAEERRSE 358
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 486 SDLNDIKVQTGILDDKRNVLNSITLTDLIQTKNNCISYNDILIRKLCHDVEKDFDALDQR 665
S+++DI T D + + ++ + ++T N DIL+ K+CH V D Q
Sbjct: 552 SEMHDISSITSAQDACQEKVVIVSSYETVETSYNV---PDILVDKVCHAVGNPLDDSLQP 608
Query: 666 NEDSG 680
E SG
Sbjct: 609 KEQSG 613
>09_02_0037 +
3251066-3251086,3251143-3251151,3251249-3251436,
3252117-3252148,3252458-3252492,3252693-3253334
Length = 308
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -3
Query: 837 TTFFKTFGLSVSXIFYIQFQLFHASKFPSYVFLISMVSQIHLLYQYHCGNLQRHCLHF 664
T FFK+ ++V + +L A K V + ++ + + YHC L+ CL F
Sbjct: 215 TGFFKSLLMAVDMYALKRLKLMCAQKLWGSVSVETVATTLGYAETYHCPELKSKCLSF 272
>10_08_0073 + 14657400-14657696,14658168-14658229,14658241-14658886
Length = 334
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -3
Query: 786 QFQLFHASKFPSYVFLISMVSQIHLLYQYHCGNLQRHCLHF 664
+ +L + +V + ++V+ + L Q+HC L++ CLHF
Sbjct: 250 RLKLICEDRLCKHVGVGTVVNILTLAGQHHCDGLKKACLHF 290
>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
Length = 819
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 351 KNDQLPNKICLDCLRQLREAYNFKLFIKHSHDLLNERNLLK-RIYFSD---LNDIKVQTG 518
KN QL ++ D L+ + F+KH L+N+R ++ + FS L D K++
Sbjct: 438 KNTQLNERLHSDVRDYLKSDVDIISFLKHLKKLVNDRRYIELEVEFSSRLKLPDFKIRAP 497
Query: 519 IL 524
IL
Sbjct: 498 IL 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,142,141
Number of Sequences: 37544
Number of extensions: 294395
Number of successful extensions: 799
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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