Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K15
         (863 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57136| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_46371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)            28   8.5  

>SB_57136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = +3

Query: 429 IKHSHDLLNERNLLKRIYFSD--LNDIKVQTGILDDKRNVLNSITLTDLIQTKNNCISYN 602
           I  + DLLNER+  + IY +   LN+   Q GI    R++LN  +      T+    S  
Sbjct: 36  IYSTRDLLNERSTQREIYSTRDLLNEGSTQRGIY-STRDLLNEGS------TQRGIYSTR 88

Query: 603 DILIRKLCHDVEKDFDALDQRNEDSGAEDFHSDTDIVN 716
           D+L  +      + +   D  NE S   + +S  D++N
Sbjct: 89  DLLNERSTQ--REIYSTRDLLNEGSTQREIYSTRDLLN 124


>SB_46371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 442 CECFIKSLKLYASRSCLRQSRHILF 368
           C+CF+  ++ + +R+ L+ SR I+F
Sbjct: 5   CDCFVTKIEQWNTRAALQPSRFIIF 29


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 291  SDGETTFNNMITSVANIPINKNDQLPN 371
            +D    F+NM+  +  IP+NKN+  PN
Sbjct: 1222 NDELEVFSNMLGELEQIPLNKNNVTPN 1248


>SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)
          Length = 330

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 669 HFSDPMHQSPFQHHDKVS*LEYHY 598
           H+ D  H++P QHH+     ++HY
Sbjct: 269 HYHDHQHRNPHQHHNNHHDHQHHY 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,976,040
Number of Sequences: 59808
Number of extensions: 374481
Number of successful extensions: 977
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)