Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K15
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical p...    28   7.5  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical pr...    28   9.9  
Z78412-3|CAB01651.2|  236|Caenorhabditis elegans Hypothetical pr...    28   9.9  
U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical p...    28   9.9  

>U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical
           protein F18A1.6a protein.
          Length = 731

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +3

Query: 222 CFIDMDRCRICLKSKKNQRSIFDSDGETTFNNMITSVANIPINKNDQLPNKICLDCLRQL 401
           C ID+DR  +C+ +   +  I  +  ++    +I   A + ++KN ++P +I L   R L
Sbjct: 574 CIIDIDRSAVCMSASYQKHRILRARNDSRGVRLILEHAGVMVSKNTKIP-QIELSPCRTL 632

Query: 402 REAYNF 419
                F
Sbjct: 633 ESVNTF 638


>U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical
           protein F18A1.6b protein.
          Length = 734

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +3

Query: 222 CFIDMDRCRICLKSKKNQRSIFDSDGETTFNNMITSVANIPINKNDQLPNKICLDCLRQL 401
           C ID+DR  +C+ +   +  I  +  ++    +I   A + ++KN ++P +I L   R L
Sbjct: 577 CIIDIDRSAVCMSASYQKHRILRARNDSRGVRLILEHAGVMVSKNTKIP-QIELSPCRTL 635

Query: 402 REAYNF 419
                F
Sbjct: 636 ESVNTF 641


>AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical
           protein C03H5.5 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
 Frame = -2

Query: 601 LYEMQLFLVWIKSV--KVIELSTFLLSSNIPVCTLISLRSLK*ILFSKFLSFNKSCECFI 428
           ++++Q  ++  +SV  K   L+T +  ++ P   L +L  L  I    FL  ++S    +
Sbjct: 207 VFQIQTSIISTESVSNKDAALNTLISLASQPEANLKTLSLLGLIRMHIFLQDHQSTSQIL 266

Query: 427 KSL--KLYASRSCLRQSRHILFGS*SFLLIGMFATDVIILLKVVSPSESNMER 275
             +  ++  + + +R +  I F   ++L+IG FA  V   LKV+S S    E+
Sbjct: 267 DQMPPEIQGTETMIRVTYQIGF---AYLIIGRFAESVDRFLKVLSSSVEQAEK 316


>Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical
           protein R07B7.4 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 747 VFLISMVSQIHLLYQYHCGNLQRHCL 670
           VF+IS++S    L  Y  GNLQ +CL
Sbjct: 385 VFIISVISLFWYLLGYCRGNLQAYCL 410


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
           protein C28H8.3 protein.
          Length = 1714

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 447 LLNERNLLKRIYFSDLNDIKVQTGILDDKRNVLN-SITLTDLIQTKNNCISYNDILIRKL 623
           L+  R    RIY+    D K    ++ D+R +LN ++ L D     N+ +  +D+   ++
Sbjct: 350 LICSRRGAHRIYYPTRTDAKRGLNVIRDRRLILNAAVVLLDKADHANSKLDLSDLWDGRM 409

Query: 624 CHDVEKDFDA 653
            + +  +  A
Sbjct: 410 VYSIFDELSA 419


>Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.6 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
 Frame = -3

Query: 822 TFGLSVSXIFYIQFQLF---HASKFPSYVFLISMVSQIHLLYQY----HCGNL 685
           TF +++  +  I F +F   +  K P++VFL+ ++S   L  QY    +CGN+
Sbjct: 99  TFLIALERVIAIYFPIFFHIYRQKLPNFVFLLIILSS-ELFNQYMLFGYCGNV 150


>Z78412-3|CAB01651.2|  236|Caenorhabditis elegans Hypothetical
           protein M176.4 protein.
          Length = 236

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = -2

Query: 754 FLCFSNF----NGFSDSFTISVSLWK 689
           FL  +NF    NGF+D +T S S WK
Sbjct: 13  FLLVANFYYQSNGFNDHYTFSYSFWK 38


>U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical
           protein ZK1248.13 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 201 NHKYKKHCFIDMDRCRICLKSKKNQRSIFDSDGETTFNNMITSV--ANIPINKNDQLPNK 374
           NH+ KK    ++ RC+   KS ++QR+  DS   T     +  +   ++P+ KN Q   +
Sbjct: 67  NHQIKKFHDSNVKRCQEYRKSMEHQRNGTDSYLLTQQRLAVHLIDFIDLPVKKNTQ--RR 124

Query: 375 ICLD 386
           IC D
Sbjct: 125 ICTD 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,467,968
Number of Sequences: 27780
Number of extensions: 322261
Number of successful extensions: 893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)