Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K15
         (863 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76310.1 68414.m08864 cyclin, putative similar to B-like cycl...    31   0.75 
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica...    29   3.0  
At5g42710.1 68418.m05202 hypothetical protein                          29   4.0  
At4g07380.1 68417.m01133 hypothetical protein                          28   7.0  
At3g50400.1 68416.m05513 GDSL-motif lipase/hydrolase family prot...    28   9.2  
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam...    28   9.2  

>At1g76310.1 68414.m08864 cyclin, putative similar to B-like cyclin
           GI:780267 from (Medicago sativa); contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 431

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
 Frame = +3

Query: 351 KNDQLPNKICLDCLRQLREA-YNFKLFIKHSHDLLNERNLLKRIYFSDLNDI--KVQTGI 521
           K D + N+     +  + E  +N  +F++H+  +L E + ++ I   D NDI  +V+  +
Sbjct: 101 KPDLISNEALDRIITDVEEGDFNEPMFVQHTEAMLEEIDKMEGIEMQDSNDIDAEVEESV 160

Query: 522 LD----DKRNVLNSIT-LTDL--IQTKNNCIS 596
           +D    DK N L+ +  + D+     KN C S
Sbjct: 161 MDIDSCDKNNPLSVVEYINDIYCFYKKNECRS 192


>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
            domain-containing protein / F-box family protein similar
            to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
            pombe}; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00646: F-box domain
          Length = 1378

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/74 (24%), Positives = 37/74 (50%)
 Frame = +3

Query: 471  KRIYFSDLNDIKVQTGILDDKRNVLNSITLTDLIQTKNNCISYNDILIRKLCHDVEKDFD 650
            + I  +D ND      +L+ K+    SIT++++   + +C     I +    HD+++  D
Sbjct: 965  RNILLADWNDPSHVESLLNSKQWKFRSITISNV---RLSCCVAGHIKMTDAGHDIKETMD 1021

Query: 651  ALDQRNEDSGAEDF 692
            AL + + D   E++
Sbjct: 1022 ALLENDLDLWTEEY 1035


>At5g42710.1 68418.m05202 hypothetical protein 
          Length = 807

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 186 TVN*CNHKYKKHCFIDMDRCRICLKSKKNQRSIFDSDGETTFNNMI 323
           T N  N+K K       DR +   KS+K  ++ +  DGETT  N+I
Sbjct: 352 TANEINYKAKSQ---QKDREKDDSKSRKRSKASYKKDGETTTKNVI 394


>At4g07380.1 68417.m01133 hypothetical protein 
          Length = 168

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/81 (20%), Positives = 39/81 (48%)
 Frame = +3

Query: 444 DLLNERNLLKRIYFSDLNDIKVQTGILDDKRNVLNSITLTDLIQTKNNCISYNDILIRKL 623
           D LN+  +++    ++ N +     I+++K +      +TD  Q  N  +S  ++++ + 
Sbjct: 49  DYLNQL-MVQDYTLAEENSLSFLDTIMENKEDTFQ---ITDPSQQSNEEVSQEEVMVNEE 104

Query: 624 CHDVEKDFDALDQRNEDSGAE 686
             +V+K  +      ED+G E
Sbjct: 105 TKEVDKMEEETQTNGEDNGTE 125


>At3g50400.1 68416.m05513 GDSL-motif lipase/hydrolase family protein
           similar to  family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 374

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 267 KNQ-RSIFDSDGETTFNNMITSVANIPINKN-DQLPNKICLDCLRQLREAYNFKL 425
           +NQ + ++D D        +  +  IP  K+ +QL +K C+D   +L   YN +L
Sbjct: 210 RNQLKRLYDMDARKFVVGNVAPIGCIPYQKSINQLNDKQCVDLANKLAIQYNARL 264


>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 883

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 627 HDVEK--DFDALDQRNEDSGAEDFHSDTDI 710
           H+ EK  D D  D+  +D G EDF +D D+
Sbjct: 210 HETEKEDDGDYEDEDEDDDGDEDFTADEDV 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,010,125
Number of Sequences: 28952
Number of extensions: 277964
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)