Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K14
         (761 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    25   0.66 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   4.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 112 TFIMIY*FVFVLTLF*YPLVVKGC*VV 32
           TF +I+  VFV TL    L++ GC VV
Sbjct: 209 TFAIIHLSVFVYTLVSVILIIMGCDVV 235


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 377 CRYQLRTATRKRSLLPSATREPDLQPHSSDRAG 475
           C+Y  R  T+  +LL       D +P+S D  G
Sbjct: 82  CKYCNRQFTKSYNLLIHERTHTDERPYSCDICG 114


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 685  CLHPPSFQCSSDGEVGPXVVPEARL 759
            CLHP  F C   G +    +P   L
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYL 1044


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 685  CLHPPSFQCSSDGEVGPXVVPEARL 759
            CLHP  F C   G +    +P   L
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYL 1044


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 685  CLHPPSFQCSSDGEVGPXVVPEARL 759
            CLHP  F C   G +    +P   L
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYL 1044


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 685  CLHPPSFQCSSDGEVGPXVVPEARL 759
            CLHP  F C   G +    +P   L
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYL 1044


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,153
Number of Sequences: 336
Number of extensions: 3652
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)