Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K14
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   5.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 63  TLWSSKGAEWFTAIEFVIGR 4
           T WSS    W   +EFV+G+
Sbjct: 389 TEWSSFINPWTKKLEFVVGQ 408


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 63  TLWSSKGAEWFTAIEFVIGR 4
           T WSS    W   +EFV+G+
Sbjct: 95  TEWSSFINPWTKKLEFVVGQ 114


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 355 LIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRPSWL 477
           +  AA    +  +Y     + IT+ N+R R    L +PS+L
Sbjct: 2   MATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 42


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 357 DRRRQTLADTSYVPQQENEVYYP 425
           D   QT++ T+ V Q+E E Y P
Sbjct: 338 DLTTQTVSTTADVLQEEEEEYSP 360


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +3

Query: 357  DRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADPTEK 491
            DR R+TL      PQQ+ +      QQ +     P      A PT+K
Sbjct: 1437 DRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDK 1483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,435
Number of Sequences: 438
Number of extensions: 4667
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)