Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K14
(761 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 2.6
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain... 29 2.6
At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 3.4
At3g13060.2 68416.m01628 expressed protein contains Pfam profile... 29 4.5
At3g13060.1 68416.m01627 expressed protein contains Pfam profile... 29 4.5
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 29 4.5
At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase compon... 28 5.9
At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein si... 28 7.8
>At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Rattus norvegicus [GI:474940], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 267
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 322 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 465
H L + C YLI A+P +T ++KT T S RT S L R
Sbjct: 91 HNFLTKEECKYLIELAKPHMEKSTVVDEKTGKSTDSRVRTSSGTFLAR 138
>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein hypothetical proteins -
Arabidopsis thaliana contains Pfam profile PF00564: PB1
domain
Length = 476
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 285 GMAAFMYR-QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE-NPIF 449
G FM + Q + Q TGQ YI TL T+Y N VYY + P+ PI+
Sbjct: 317 GYPPFMNQAQQQHIQVIYTGQPYITGNSPMTLPATAY--HHTNHVYYQRPPQPYPIY 371
>At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Mus musculus [SP|Q60715];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 287
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 322 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 465
H L + C YLI A+P + +T + +T S RT S L+R
Sbjct: 89 HNFLSKEECEYLISLAKPHMVKSTVVDSETGKSKDSRVRTSSGTFLRR 136
>At3g13060.2 68416.m01628 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 634
Score = 28.7 bits (61), Expect = 4.5
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = +3
Query: 177 YGNVDSLSYGS--GDSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVY 350
Y NV+ L S G + LV Y YNP+ G + P A+ PS GQ+Y
Sbjct: 100 YVNVEGLDITSPVGFNENASLVYQTGYG--YNPQMPYGPYS------PAASPLPSEGQLY 151
Query: 351 IPDRRRQTLADTSY---VPQQENEVYYPQQPE 437
P + + A Y VP + P QPE
Sbjct: 152 SPQQFPFSGASPYYQQVVPPSMQYITSPTQPE 183
>At3g13060.1 68416.m01627 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 551
Score = 28.7 bits (61), Expect = 4.5
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = +3
Query: 177 YGNVDSLSYGS--GDSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVY 350
Y NV+ L S G + LV Y YNP+ G + P A+ PS GQ+Y
Sbjct: 100 YVNVEGLDITSPVGFNENASLVYQTGYG--YNPQMPYGPYS------PAASPLPSEGQLY 151
Query: 351 IPDRRRQTLADTSY---VPQQENEVYYPQQPE 437
P + + A Y VP + P QPE
Sbjct: 152 SPQQFPFSGASPYYQQVVPPSMQYITSPTQPE 183
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = +3
Query: 165 YNPYYGNVDSLSYGSGDSNRGGLVMSRYYN----PYYNPRAVGGGMAAFMYRQPEAAQAP 332
Y PY G+ YG G + G Y N PY NP G G + R AQAP
Sbjct: 238 YPPYGGSGYGTGYGYGSNGVGYGGFGGYGNPAGAPYGNPSVPGAGFGSGP-RSSWGAQAP 296
Query: 333 S 335
S
Sbjct: 297 S 297
>At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase component
family protein / Gpi1 family protein similar to
SP|O14357 N-acetylglucosaminyl-phosphatidylinositol
biosynthetic protein gpi1 {Schizosaccharomyces pombe};
contains Pfam profile PF05024: N-acetylglucosaminyl
transferase component (Gpi1)
Length = 560
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 415 SITLSNQRTRSSAPLKRPSWLTPL 486
S++ SN ++ APLK+P W+ L
Sbjct: 49 SLSFSNSSPQTKAPLKKPKWVDDL 72
>At4g26830.1 68417.m03863 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 448
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 102 IMKVMYAFVMMSCA-LLVQAYPYNPYYGNVD--SLSYGSGDSNRGGL 233
++K M A + + + L+V AYP+ Y N D SL Y N G +
Sbjct: 179 VVKPMLALLQQTSSYLMVNAYPFFAYAANADKISLDYALFKENAGNI 225
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,424
Number of Sequences: 28952
Number of extensions: 315570
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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