Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K13
(766 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VU02 Cluster: Probable small nuclear ribonucleoprotei... 129 6e-29
UniRef50_P62314 Cluster: Small nuclear ribonucleoprotein Sm D1; ... 128 1e-28
UniRef50_Q9SY09 Cluster: Small nuclear riboprotein Sm-D1; n=9; E... 118 2e-25
UniRef50_Q10013 Cluster: Probable small nuclear ribonucleoprotei... 114 2e-24
UniRef50_Q5CRM6 Cluster: Small nuclear ribonucleoprotein D1. SM ... 95 2e-18
UniRef50_A4RMI1 Cluster: Putative uncharacterized protein; n=3; ... 94 4e-18
UniRef50_Q8IIA8 Cluster: Small nuclear ribonucleoprotein D1, put... 88 2e-16
UniRef50_A2E4T4 Cluster: Putative uncharacterized protein; n=1; ... 85 2e-15
UniRef50_Q4SJ08 Cluster: Chromosome 21 SCAF14577, whole genome s... 73 1e-11
UniRef50_Q01B18 Cluster: Small nuclear riboprotein Sm-D1-like pr... 66 1e-09
UniRef50_A4VAK3 Cluster: Small nuclear ribonucleoprotein D1; n=7... 64 4e-09
UniRef50_Q4QBP1 Cluster: Small nuclear ribonucleoprotein, putati... 60 6e-08
UniRef50_Q6BXY3 Cluster: Similar to sp|Q02260 Saccharomyces cere... 56 7e-07
UniRef50_Q02260 Cluster: Small nuclear ribonucleoprotein Sm D1; ... 54 5e-06
UniRef50_Q3LWH6 Cluster: MRNA splicing factor snRNP Sm-D; n=1; B... 49 1e-04
UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM doma... 49 1e-04
UniRef50_Q8SSM1 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN; n=1; E... 49 1e-04
UniRef50_Q969L4 Cluster: U7 snRNA-associated Sm-like protein LSm... 47 6e-04
UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putati... 44 0.003
UniRef50_Q98S70 Cluster: Probable small nuclear ribonucleoprotei... 44 0.004
UniRef50_Q8MVI2 Cluster: U7 snRNP-specific SM-like protein; n=1;... 44 0.005
UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein ... 43 0.010
UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 42 0.017
UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266, w... 42 0.022
UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145, w... 42 0.022
UniRef50_Q6FQ95 Cluster: Similar to sp|Q02260 Saccharomyces cere... 42 0.022
UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=1... 42 0.022
UniRef50_A3LPF4 Cluster: Predicted protein; n=3; Saccharomycetac... 42 0.022
UniRef50_Q54F84 Cluster: Putative uncharacterized protein; n=1; ... 41 0.029
UniRef50_Q74N54 Cluster: NEQ037; n=1; Nanoarchaeum equitans|Rep:... 41 0.029
UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:... 41 0.039
UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like pr... 41 0.039
UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole gen... 40 0.051
UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein... 40 0.051
UniRef50_UPI0000499737 Cluster: U6 snRNA-associated Sm-like prot... 40 0.068
UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 40 0.068
UniRef50_Q8SSB9 Cluster: U6 snRNA ASSOCIATED SM-LIKE PROTEIN; n=... 40 0.089
UniRef50_P53247 Cluster: Putative uncharacterized protein YGR073... 40 0.089
UniRef50_A0CX56 Cluster: Chromosome undetermined scaffold_3, who... 39 0.12
UniRef50_Q751K2 Cluster: AGL296Wp; n=1; Eremothecium gossypii|Re... 39 0.16
UniRef50_A1C7L1 Cluster: Small nuclear ribonucleoprotein (LSM2),... 39 0.16
UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein... 38 0.21
UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR RIBONUCLEOP... 38 0.21
UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1; T... 38 0.21
UniRef50_Q7QVP6 Cluster: GLP_305_2464_2751; n=1; Giardia lamblia... 38 0.27
UniRef50_Q96UG3 Cluster: Putative uncharacterized protein putati... 38 0.36
UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3; ... 38 0.36
UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 37 0.48
UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1; ... 37 0.48
UniRef50_A6S1F2 Cluster: Putative uncharacterized protein; n=3; ... 37 0.48
UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 37 0.63
UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole geno... 36 0.83
UniRef50_Q4UBR6 Cluster: U6 snrna-associated sm-like protein lsm... 36 0.83
UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative; ... 36 0.83
UniRef50_A7SC68 Cluster: Predicted protein; n=1; Nematostella ve... 36 0.83
UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 36 0.83
UniRef50_A4VD81 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_A5DAN5 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q4YPG0 Cluster: U6 snRNA-associated sm-like protein Lsm... 36 1.5
UniRef50_Q9Y333 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 1.5
UniRef50_Q9ES84 Cluster: SnRNP core protein SMX5d; n=12; Eukaryo... 35 1.9
UniRef50_Q5KJW6 Cluster: Glycine rich protein, putative; n=2; Di... 35 1.9
UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm... 35 1.9
UniRef50_UPI0000499249 Cluster: U6 snRNA-associated Sm-like prot... 35 2.5
UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotei... 35 2.5
UniRef50_P38203 Cluster: U6 snRNA-associated Sm-like protein LSm... 35 2.5
UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN; ... 34 4.4
UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.4
UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1; ... 34 4.4
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei... 33 5.9
UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 5.9
UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein LSm... 33 5.9
UniRef50_Q54MY6 Cluster: Putative uncharacterized protein; n=1; ... 33 7.8
UniRef50_A2FH88 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 33 7.8
>UniRef50_Q9VU02 Cluster: Probable small nuclear ribonucleoprotein
Sm D1; n=20; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D1 - Drosophila melanogaster (Fruit
fly)
Length = 124
Score = 129 bits (312), Expect = 6e-29
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 293
MKLVRFLMKLSHE VTIELKNG+ +HGTITGVDVAMNTHLK+V++T+KNR+ + LETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSI 60
Query: 294 RGNNIRYYXXXXXXXXXXXXIDDTPK 371
RGNNIRY+ IDDTPK
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPK 86
>UniRef50_P62314 Cluster: Small nuclear ribonucleoprotein Sm D1;
n=37; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D1 - Homo sapiens (Human)
Length = 119
Score = 128 bits (310), Expect = 1e-28
Identities = 63/86 (73%), Positives = 69/86 (80%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 293
MKLVRFLMKLSHE VTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 294 RGNNIRYYXXXXXXXXXXXXIDDTPK 371
RGNNIRY+ +D PK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPK 86
>UniRef50_Q9SY09 Cluster: Small nuclear riboprotein Sm-D1; n=9;
Eukaryota|Rep: Small nuclear riboprotein Sm-D1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 116
Score = 118 bits (283), Expect = 2e-25
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 293
MKLVRFLMKL++E V+IELKNG++VHGTITGVDV+MNTHLKAVK+TLK + + L+ LS+
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60
Query: 294 RGNNIRYYXXXXXXXXXXXXIDDTPK 371
RGNNIRYY ++DTP+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPR 86
>UniRef50_Q10013 Cluster: Probable small nuclear ribonucleoprotein
Sm D1; n=10; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D1 - Caenorhabditis elegans
Length = 126
Score = 114 bits (275), Expect = 2e-24
Identities = 56/86 (65%), Positives = 65/86 (75%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 293
MKLVRFLMKLSHE V IELKNG+ V GTI GVDVAMNTHL+AV +T+KN+E ++L+TLSI
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSI 60
Query: 294 RGNNIRYYXXXXXXXXXXXXIDDTPK 371
RGNNIRY IDD P+
Sbjct: 61 RGNNIRYIILPDPLALDTLLIDDEPR 86
>UniRef50_Q5CRM6 Cluster: Small nuclear ribonucleoprotein D1. SM
domain containing protein; n=2; Cryptosporidium|Rep:
Small nuclear ribonucleoprotein D1. SM domain containing
protein - Cryptosporidium parvum Iowa II
Length = 137
Score = 94.7 bits (225), Expect = 2e-18
Identities = 43/86 (50%), Positives = 60/86 (69%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 293
MKL+RFLMKL + V IELKNG+++ GTI VD++MNT+LK VK+++K+R + L +++
Sbjct: 12 MKLIRFLMKLVNNSVVIELKNGTIIQGTIVTVDMSMNTYLKNVKMSVKHRNPVSLSQITV 71
Query: 294 RGNNIRYYXXXXXXXXXXXXIDDTPK 371
RGN IRY+ IDDTPK
Sbjct: 72 RGNTIRYFILPDSLPLDALLIDDTPK 97
>UniRef50_A4RMI1 Cluster: Putative uncharacterized protein; n=3;
Fungi/Metazoa group|Rep: Putative uncharacterized
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 125
Score = 93.9 bits (223), Expect = 4e-18
Identities = 44/86 (51%), Positives = 59/86 (68%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 293
MKLVRFLMK ++E VTIELKNG++VHGTI V MNT L+ VK+T + ++ + L+ ++I
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMNI 60
Query: 294 RGNNIRYYXXXXXXXXXXXXIDDTPK 371
RG+ IRYY +DDTPK
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDTPK 86
>UniRef50_Q8IIA8 Cluster: Small nuclear ribonucleoprotein D1,
putative; n=2; Eukaryota|Rep: Small nuclear
ribonucleoprotein D1, putative - Plasmodium falciparum
(isolate 3D7)
Length = 126
Score = 88.2 bits (209), Expect = 2e-16
Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 11/97 (11%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKN----------R 263
MKLV FLMKL++E VTIELKNG+++ G IT VD+ MNTH+K VKV +KN +
Sbjct: 1 MKLVHFLMKLTNENVTIELKNGTLITGIITAVDIKMNTHMKNVKVVIKNKNIAEYNVNTK 60
Query: 264 EELQLETLSIRGNNIRYYXXXXXXXXXXXXIDD-TPK 371
+ L LE ++IRGNNIRY+ ++D TPK
Sbjct: 61 QFLSLEHVTIRGNNIRYFILSDSLPLDSLLVEDTTPK 97
>UniRef50_A2E4T4 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 111
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/85 (48%), Positives = 54/85 (63%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 293
MKLV FL KL E VT+ELK+ +V+ GT+ GVD AMNTHL+ V + +EE +LE L+I
Sbjct: 1 MKLVHFLRKLVRETVTVELKDNTVIKGTVVGVDSAMNTHLRLVHIKAPGQEEKRLENLTI 60
Query: 294 RGNNIRYYXXXXXXXXXXXXIDDTP 368
RG +IRY +DD+P
Sbjct: 61 RGASIRYVILPDVLNLDTLLVDDSP 85
>UniRef50_Q4SJ08 Cluster: Chromosome 21 SCAF14577, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 21
SCAF14577, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 206
Score = 72.5 bits (170), Expect = 1e-11
Identities = 35/56 (62%), Positives = 40/56 (71%)
Frame = +3
Query: 204 GVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIRYYXXXXXXXXXXXXIDDTPK 371
GVDV+MNTHLKAVK+TLKNRE QLE+LSIRGNNIRY+ +D PK
Sbjct: 1 GVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPK 56
>UniRef50_Q01B18 Cluster: Small nuclear riboprotein Sm-D1-like
protein; n=1; Ostreococcus tauri|Rep: Small nuclear
riboprotein Sm-D1-like protein - Ostreococcus tauri
Length = 133
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/56 (53%), Positives = 36/56 (64%)
Frame = +3
Query: 204 GVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIRYYXXXXXXXXXXXXIDDTPK 371
GVDV+MNTHLK VK+TLK + +E LS+RGN IRYY +DDTPK
Sbjct: 52 GVDVSMNTHLKQVKLTLKGKNPTNVEHLSVRGNTIRYYILPDSLNLDTLLVDDTPK 107
>UniRef50_A4VAK3 Cluster: Small nuclear ribonucleoprotein D1; n=7;
Eukaryota|Rep: Small nuclear ribonucleoprotein D1 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 93
Score = 64.1 bits (149), Expect = 4e-09
Identities = 31/51 (60%), Positives = 35/51 (68%)
Frame = +3
Query: 219 MNTHLKAVKVTLKNREELQLETLSIRGNNIRYYXXXXXXXXXXXXIDDTPK 371
MNTHLKAVK+TLKNRE QLE+LSIRGNNIRY+ +D PK
Sbjct: 10 MNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPK 60
>UniRef50_Q4QBP1 Cluster: Small nuclear ribonucleoprotein, putative;
n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 103
Score = 60.1 bits (139), Expect = 6e-08
Identities = 28/65 (43%), Positives = 40/65 (61%)
Frame = +3
Query: 120 LVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRG 299
L+ FL +L V IELKN S+V G I VD MNT++ K+T K + +++E +RG
Sbjct: 13 LITFLQQLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHAKITSKGKNPVEVEEYMVRG 72
Query: 300 NNIRY 314
+ IRY
Sbjct: 73 STIRY 77
>UniRef50_Q6BXY3 Cluster: Similar to sp|Q02260 Saccharomyces
cerevisiae YGR074w SMD1 snRNA- associated protein; n=4;
Saccharomycetales|Rep: Similar to sp|Q02260
Saccharomyces cerevisiae YGR074w SMD1 snRNA- associated
protein - Debaryomyces hansenii (Yeast) (Torulaspora
hansenii)
Length = 131
Score = 56.4 bits (130), Expect = 7e-07
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Frame = +3
Query: 114 MKLVRFLMKL---SHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLET 284
MKLVRFLM L +++ +T+ELKNG+ ++G I MN +K +K++ +++ L+
Sbjct: 1 MKLVRFLMNLPNATNQPITVELKNGNSINGQILSCSPLMNLSMKNIKLSQPHQDPQLLQF 60
Query: 285 LSIRGNNIR 311
++IRGN IR
Sbjct: 61 INIRGNQIR 69
>UniRef50_Q02260 Cluster: Small nuclear ribonucleoprotein Sm D1;
n=6; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein Sm D1 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 146
Score = 53.6 bits (123), Expect = 5e-06
Identities = 28/47 (59%), Positives = 32/47 (68%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTL 254
MKLV FL KL +E VTIELKNG+ V GT+ V MN L VK+TL
Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTL 47
>UniRef50_Q3LWH6 Cluster: MRNA splicing factor snRNP Sm-D; n=1;
Bigelowiella natans|Rep: MRNA splicing factor snRNP Sm-D
- Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 77
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +3
Query: 138 KLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIRY 314
KL +E + I LK+ + + GT+ D+ N LK KV+ KN+ E+ + L IRGN++RY
Sbjct: 10 KLKNESLKIVLKSHTTIIGTLQDSDILGNIVLKFAKVSQKNKNEMIYKDLIIRGNSVRY 68
>UniRef50_Q5CSL0 Cluster: Small nucealr riboprotein SMD3, SM domain;
n=5; Apicomplexa|Rep: Small nucealr riboprotein SMD3, SM
domain - Cryptosporidium parvum Iowa II
Length = 143
Score = 49.2 bits (112), Expect = 1e-04
Identities = 29/86 (33%), Positives = 48/86 (55%)
Frame = +3
Query: 57 KPYRRRYCFHXKLVNKSSXMKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLK 236
K + ++ FH +N + + L L H VTIELK+G + GT+T V+ MN L+
Sbjct: 11 KNFLAQFTFH---INMTIGIPLKLLYEGLGH-IVTIELKSGDLYRGTLTHVEDNMNCMLE 66
Query: 237 AVKVTLKNREELQLETLSIRGNNIRY 314
V T+++ + + LE +RG+ IR+
Sbjct: 67 HVNATMRDGKPVSLEQCYLRGSQIRF 92
>UniRef50_Q8SSM1 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 99
Score = 48.8 bits (111), Expect = 1e-04
Identities = 30/86 (34%), Positives = 40/86 (46%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 293
MKLVR L K +E V IE K G + G I VD MN + V V + T ++
Sbjct: 1 MKLVRVLRKCKNERVKIETKEGRRIEGKIVSVDKTMNVEMVDVVV-----DGAPASTYTV 55
Query: 294 RGNNIRYYXXXXXXXXXXXXIDDTPK 371
RG++IRY +DD P+
Sbjct: 56 RGSSIRYVLFRDDIDFKPLLVDDRPR 81
>UniRef50_Q969L4 Cluster: U7 snRNA-associated Sm-like protein LSm10;
n=20; Euteleostomi|Rep: U7 snRNA-associated Sm-like
protein LSm10 - Homo sapiens (Human)
Length = 123
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +3
Query: 108 SXMKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETL 287
S L+ L L T++L++ SV HG I VD MN L V T + +++L+ L
Sbjct: 13 SENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDL 72
Query: 288 SIRGNNIRY 314
+ G N+RY
Sbjct: 73 FVTGRNVRY 81
>UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putative;
n=6; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 113
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +3
Query: 123 VRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
++ L H V+IE+ G V HGT+ + MN LK T + +E +++++ +RG+
Sbjct: 7 IKVLFDALHLKVSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDSVFVRGS 66
Query: 303 NIRYY 317
NI ++
Sbjct: 67 NIVFF 71
>UniRef50_Q98S70 Cluster: Probable small nuclear ribonucleoprotein
D1; n=1; Guillardia theta|Rep: Probable small nuclear
ribonucleoprotein D1 - Guillardia theta (Cryptomonas
phi)
Length = 77
Score = 44.0 bits (99), Expect = 0.004
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 293
MK+ F+ +L E + IELKN ++ G I VD MN + + + ++ LSI
Sbjct: 1 MKIYNFIKQLKGEEIIIELKNNIIIMGVIVNVDKNMNLKVSNISDIDIDGQKFFKGNLSI 60
Query: 294 RGNNIR 311
R NNIR
Sbjct: 61 RFNNIR 66
>UniRef50_Q8MVI2 Cluster: U7 snRNP-specific SM-like protein; n=1;
Boltenia villosa|Rep: U7 snRNP-specific SM-like protein
- Boltenia villosa
Length = 100
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +3
Query: 120 LVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRG 299
L L + + +T+E+KN + + GT+ VD MN +K K++ N + E + ++
Sbjct: 15 LAILLCGMEGKLITVEMKNDTTITGTLXCVDGFMNMFMKKAKISSCNGTSMSAERIHVKA 74
Query: 300 NNIRY 314
+N RY
Sbjct: 75 SNTRY 79
>UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein
(snrnp),putative; n=1; Eimeria tenella|Rep: small
nuclear ribonucleoprotein (snrnp),putative - Eimeria
tenella
Length = 125
Score = 42.7 bits (96), Expect = 0.010
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = +3
Query: 135 MKLSHE----XVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
+KL HE +T+E K GS+ GT+ + MN ++ V VT K+ + L LE + IRG+
Sbjct: 11 VKLLHEGLGHTITVETKTGSLYRGTLENAEDNMNMLIQGVTVTHKDGKVLSLEQVYIRGS 70
Query: 303 NIR 311
++
Sbjct: 71 QVQ 73
>UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanococcus|Rep: Like-Sm ribonucleoprotein, core -
Methanococcus maripaludis
Length = 72
Score = 41.9 bits (94), Expect = 0.017
Identities = 23/61 (37%), Positives = 35/61 (57%)
Frame = +3
Query: 132 LMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIR 311
L K + VT+ LK+G VV G + D+ MN L+ K+ +N EE + L +RG+N+
Sbjct: 11 LGKSINTNVTVFLKDGKVVKGRLKAYDLHMNVALENAKI--ENDEEKEFPMLVVRGDNVL 68
Query: 312 Y 314
Y
Sbjct: 69 Y 69
>UniRef50_A0CT01 Cluster: Chromosome undetermined scaffold_266,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_266,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 363
Score = 41.5 bits (93), Expect = 0.022
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +3
Query: 123 VRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
++ + + H VT+ELK G + G + + MN L V++ ++ + LE + +RG+
Sbjct: 7 LKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQVYLRGS 66
Query: 303 NIRY 314
IR+
Sbjct: 67 QIRF 70
>UniRef50_A0C2U8 Cluster: Chromosome undetermined scaffold_145,
whole genome shotgun sequence; n=5; Eukaryota|Rep:
Chromosome undetermined scaffold_145, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 41.5 bits (93), Expect = 0.022
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +3
Query: 123 VRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
++ + + H VT+ELK G + G + + MN L V++ ++ + LE + +RG+
Sbjct: 7 LKIMHEAVHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQVYLRGS 66
Query: 303 NIRY 314
IR+
Sbjct: 67 QIRF 70
>UniRef50_Q6FQ95 Cluster: Similar to sp|Q02260 Saccharomyces
cerevisiae YGR074w SMD1 snRNA- associated protein; n=1;
Candida glabrata|Rep: Similar to sp|Q02260 Saccharomyces
cerevisiae YGR074w SMD1 snRNA- associated protein -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 133
Score = 41.5 bits (93), Expect = 0.022
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLK 236
+KL FL KL ++ VT+EL+NGS V+G + V N +L+
Sbjct: 3 LKLTNFLRKLQNQYVTLELQNGSTVYGMVISVSPHSNVNLR 43
>UniRef50_Q5KLG7 Cluster: Pre-mRNA splicing factor, putative; n=12;
Eukaryota|Rep: Pre-mRNA splicing factor, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 124
Score = 41.5 bits (93), Expect = 0.022
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +3
Query: 135 MKLSHEX----VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
+KL HE +T+ELK G + G + + +N L+ + VT ++ QLE + IRG+
Sbjct: 8 VKLLHESLGHIITVELKTGEMYRGKLMEAEDTLNIALREITVTARDGRVSQLEQVYIRGS 67
Query: 303 NIRY 314
IR+
Sbjct: 68 MIRF 71
>UniRef50_A3LPF4 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 147
Score = 41.5 bits (93), Expect = 0.022
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 156 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE-LQLETLSIRGNNIRY 314
+ IELKNG ++G + D MN LK V T N E L++ + IRGN+I+Y
Sbjct: 15 ILIELKNGETLNGGLVNCDSWMNLTLKDVIQTSSNGETFLKIPEVYIRGNHIKY 68
>UniRef50_Q54F84 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 137
Score = 41.1 bits (92), Expect = 0.029
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +3
Query: 156 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVT---LKNREELQLETLSIRGNNIRY 314
+TI+L++ ++GTIT VD +N L K+T KN+ + ++ + I+ NIR+
Sbjct: 43 ITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNTRYKNKRDEHVQEILIQSRNIRF 98
>UniRef50_Q74N54 Cluster: NEQ037; n=1; Nanoarchaeum equitans|Rep:
NEQ037 - Nanoarchaeum equitans
Length = 66
Score = 41.1 bits (92), Expect = 0.029
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL 272
M+ + FL L + V + LKNG + G + D+ +N ++K VK+ +N +EL
Sbjct: 1 MRPLEFLASLKGKRVKVYLKNGKTIEGLLESSDIHVNLYMKEVKIDEENLKEL 53
>UniRef50_Q9LMW6 Cluster: F5M15.9; n=4; Arabidopsis thaliana|Rep:
F5M15.9 - Arabidopsis thaliana (Mouse-ear cress)
Length = 207
Score = 40.7 bits (91), Expect = 0.039
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +3
Query: 123 VRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
V+ L + S VT+ELK+G + G++ + N L+ + T K+ + QLE + IRG+
Sbjct: 9 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68
Query: 303 NIR 311
+R
Sbjct: 69 KVR 71
>UniRef50_Q9LGE6 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm4; n=5; Eukaryota|Rep: Probable U6
snRNA-associated Sm-like protein LSm4 - Oryza sativa
subsp. japonica (Rice)
Length = 147
Score = 40.7 bits (91), Expect = 0.039
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 162 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 314
+ELKNG +G + D MN HL+ V T K+ ++ ++ IRGN I+Y
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKY 68
>UniRef50_A7PS14 Cluster: Chromosome chr14 scaffold_27, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_27, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 281
Score = 40.3 bits (90), Expect = 0.051
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 162 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 314
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y
Sbjct: 103 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKY 154
>UniRef50_Q54KX4 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 177
Score = 40.3 bits (90), Expect = 0.051
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 156 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 314
+ +ELKNG +G + D MN +LK V T K+ ++ ++++ IRGN I+Y
Sbjct: 15 IMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKY 68
>UniRef50_UPI0000499737 Cluster: U6 snRNA-associated Sm-like protein
LSm2; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U6
snRNA-associated Sm-like protein LSm2 - Entamoeba
histolytica HM-1:IMSS
Length = 96
Score = 39.9 bits (89), Expect = 0.068
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLET-LS 290
M F L + V +ELKN ++ GT+ VD +N L +K ++Q T
Sbjct: 1 MLFYSFFKTLIGKEVVVELKNDVIITGTLIAVDQMLNIKLNNLKCDATLFPQIQTMTDCF 60
Query: 291 IRGNNIRY 314
IRGN IRY
Sbjct: 61 IRGNTIRY 68
>UniRef50_Q17348 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=3; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D3 - Caenorhabditis elegans
Length = 136
Score = 39.9 bits (89), Expect = 0.068
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +3
Query: 123 VRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
++ L + VT+E G V G ++ + MN L VT ++ QL+ + IRGN
Sbjct: 8 IKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGN 67
Query: 303 NIRY 314
IR+
Sbjct: 68 KIRF 71
>UniRef50_Q8SSB9 Cluster: U6 snRNA ASSOCIATED SM-LIKE PROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U6 snRNA ASSOCIATED
SM-LIKE PROTEIN - Encephalitozoon cuniculi
Length = 88
Score = 39.5 bits (88), Expect = 0.089
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 132 LMKLS-HEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 308
L+++S + V +ELKN + G + D+AMN HLK+V + ++ + + ++G +I
Sbjct: 6 LLRISRNRIVELELKNNDQLRGLLHKCDMAMNLHLKSVTIQKEDGSSIFINECYLKGTSI 65
Query: 309 R 311
R
Sbjct: 66 R 66
>UniRef50_P53247 Cluster: Putative uncharacterized protein YGR073C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YGR073C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 123
Score = 39.5 bits (88), Expect = 0.089
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = -1
Query: 250 VTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTXSWLSFIK 131
V FT+ K FI T VP T +PFF+S+VT S SF K
Sbjct: 47 VNFTSVKIAFICGDTDCSVPQTVVPFFSSMVTCSLRSFFK 86
>UniRef50_A0CX56 Cluster: Chromosome undetermined scaffold_3, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_3,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 100
Score = 39.1 bits (87), Expect = 0.12
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +3
Query: 156 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETLSIRGNNIRY 314
VTIELKNG + G IT VD +N +L +V+ LK + + L IRG+ ++Y
Sbjct: 20 VTIELKNGLQIQGQITYVDDNLNFNLVDPEVSDPLKQPQLMTLRNSFIRGSTVKY 74
>UniRef50_Q751K2 Cluster: AGL296Wp; n=1; Eremothecium gossypii|Rep:
AGL296Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 168
Score = 38.7 bits (86), Expect = 0.16
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 162 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIRY 314
IELKNG + G + VD MN L++V V + + LQL + +RG+ I+Y
Sbjct: 17 IELKNGETIEGELVNVDNWMNLTLQSV-VHAGSDQTLQLPEIYVRGSFIKY 66
>UniRef50_A1C7L1 Cluster: Small nuclear ribonucleoprotein (LSM2),
putative; n=5; Fungi/Metazoa group|Rep: Small nuclear
ribonucleoprotein (LSM2), putative - Aspergillus
clavatus
Length = 98
Score = 38.7 bits (86), Expect = 0.16
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKV-TLKNREEL-QLETL 287
M F L+++ VTIELKN + GT+ VD +N L V V L L ++ +
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 288 SIRGNNIRY 314
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 85
Score = 38.3 bits (85), Expect = 0.21
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 132 LMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 308
L KL + + I+L VHG + G D MN LK + E+ ++ + IRGN+I
Sbjct: 11 LTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSI 69
>UniRef50_Q8SW39 Cluster: Similarity to SMALL NUCLEAR
RIBONUCLEOPROTEIN D3; n=1; Encephalitozoon cuniculi|Rep:
Similarity to SMALL NUCLEAR RIBONUCLEOPROTEIN D3 -
Encephalitozoon cuniculi
Length = 87
Score = 38.3 bits (85), Expect = 0.21
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +3
Query: 135 MKLSHEX----VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
+KL HE VT+E +G + G + VD MN L V VT N L + + IRG+
Sbjct: 7 LKLLHESQGFIVTVETSSGDMYRGRVREVDDYMNLVLDDVVVT-SNNSSLSRKEVLIRGS 65
Query: 303 NIRYY 317
+IR++
Sbjct: 66 SIRFF 70
>UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Thermofilum pendens Hrk 5|Rep: Like-Sm
ribonucleoprotein, core - Thermofilum pendens (strain
Hrk 5)
Length = 100
Score = 38.3 bits (85), Expect = 0.21
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHL-KAVKVTLKNREELQLETLS 290
M+ + L S + V ++LK+GS G + D AMN L A ++T N+ QL T+
Sbjct: 1 MQPIEHLRNQSGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTETNKVVAQLGTVF 60
Query: 291 IRGNNIRY 314
IRG+N+ +
Sbjct: 61 IRGSNLLF 68
>UniRef50_Q7QVP6 Cluster: GLP_305_2464_2751; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_305_2464_2751 - Giardia lamblia ATCC
50803
Length = 95
Score = 37.9 bits (84), Expect = 0.27
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 251
M+L+R + KL + V ELK G ++ GT+ VD HL T
Sbjct: 1 MQLIRLVQKLQGQRVRFELKAGGMIEGTVALVDATFVVHLSQASYT 46
>UniRef50_Q96UG3 Cluster: Putative uncharacterized protein putative
LSM4; n=1; Kluyveromyces lactis|Rep: Putative
uncharacterized protein putative LSM4 - Kluyveromyces
lactis (Yeast) (Candida sphaerica)
Length = 183
Score = 37.5 bits (83), Expect = 0.36
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 150 EXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIRY 314
+ + +ELKNG V GT++ VD MN L V + + E L+L + ++G+ I+Y
Sbjct: 13 QTMHVELKNGETVEGTLSDVDNWMNLTLSNV-THVASGETLKLPSFYLKGSFIKY 66
>UniRef50_P62318 Cluster: Small nuclear ribonucleoprotein Sm D3;
n=40; Fungi/Metazoa group|Rep: Small nuclear
ribonucleoprotein Sm D3 - Homo sapiens (Human)
Length = 126
Score = 37.5 bits (83), Expect = 0.36
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 123 VRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 303 NIRY 314
IR+
Sbjct: 67 KIRF 70
>UniRef50_A2E8V8 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 112
Score = 37.1 bits (82), Expect = 0.48
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +3
Query: 123 VRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
++ L + ++ V I L G GT+ V+ MN L V T K+ ++++ + +RG+
Sbjct: 7 IKLLHEATNFVVEIHLNTGDSYRGTLKYVEDNMNCWLTNVVHTQKDGQQIKFDKTYVRGS 66
Query: 303 NIRYY 317
NI Y+
Sbjct: 67 NILYF 71
>UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 157
Score = 37.1 bits (82), Expect = 0.48
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 99 NKSSXMKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREEL 272
+ S+ M F L VT+ELKN + G + VD +N L ++V LK
Sbjct: 55 DSSAKMLFFSFFKTLVDHEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLS 114
Query: 273 QLETLSIRGNNIRY 314
++ + IRG+ +RY
Sbjct: 115 SVKNVFIRGSVVRY 128
>UniRef50_A6S1F2 Cluster: Putative uncharacterized protein; n=3;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 690
Score = 37.1 bits (82), Expect = 0.48
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 162 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 314
+ELK+G ++G + D MN LK V T + ++ +L + ++GNNI+Y
Sbjct: 18 VELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVKGNNIKY 69
>UniRef50_A2DK14 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 119
Score = 36.7 bits (81), Expect = 0.63
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 156 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIRYY 317
VTIE K G + GT+ G + MN L V T + + + IRG+NI ++
Sbjct: 23 VTIETKQGEMYRGTLFGSEDTMNVELHDVTYTNSKGVDSHKDKVYIRGSNIVFF 76
>UniRef50_A7PSI3 Cluster: Chromosome chr6 scaffold_28, whole genome
shotgun sequence; n=6; Eukaryota|Rep: Chromosome chr6
scaffold_28, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 199
Score = 36.3 bits (80), Expect = 0.83
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +3
Query: 123 VRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
V+ L + + V +ELK+G + G++ N L+ + T+K+ + QLE + IRG
Sbjct: 9 VKLLHEAAGHVVIVELKSGELYRGSMIECKDNWNCQLENITFTVKDGKVSQLEHVFIRGI 68
Query: 303 NIRY 314
+R+
Sbjct: 69 KVRF 72
>UniRef50_Q4UBR6 Cluster: U6 snrna-associated sm-like protein lsm4,
putative; n=1; Theileria annulata|Rep: U6
snrna-associated sm-like protein lsm4, putative -
Theileria annulata
Length = 105
Score = 36.3 bits (80), Expect = 0.83
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 162 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIR 311
IELKNG G + D MN H+ V T K+ + +L+ IRGN ++
Sbjct: 18 IELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFIRGNTVK 68
>UniRef50_Q4MZK0 Cluster: U6 snRNA-associated protein, putative;
n=1; Theileria parva|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 141
Score = 36.3 bits (80), Expect = 0.83
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 162 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIR 311
IELKNG G + D MN H+ V T K+ + +L+ IRGN ++
Sbjct: 18 IELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFIRGNTVK 68
>UniRef50_A7SC68 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 114
Score = 36.3 bits (80), Expect = 0.83
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +3
Query: 120 LVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRG 299
LV + + T+EL+N S + G I VD MN +K VK + E L + + G
Sbjct: 13 LVCLIKAVQGYNTTVELRNESYLEGFIEHVDGFMNIKMKDVKFVKASGEVDNLPAMFVVG 72
Query: 300 NNIRY 314
IRY
Sbjct: 73 TQIRY 77
>UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 79
Score = 36.3 bits (80), Expect = 0.83
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +3
Query: 105 SSXMKLVRFLMKLSHEXVTIELKN--GSVVHGTITGVDVAMNTHLK-AVKVTLKNREELQ 275
SS + ++ + L +++E+K G G + VD +N HL+ +++ + KN+ +
Sbjct: 3 SSIVLPIKKVYSLVDTLISVEMKEDEGRTFQGRLVAVDEYLNLHLEESIETSGKNKGR-E 61
Query: 276 LETLSIRGNNI 308
L TL IRGNNI
Sbjct: 62 LGTLVIRGNNI 72
>UniRef50_A4VD81 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 171
Score = 35.9 bits (79), Expect = 1.1
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +3
Query: 156 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLS---IRGNNIRY 314
+T+ELKN + G IT VD MN +L V ++++E +QL IRG+++RY
Sbjct: 94 ITVELKNDVKIKGKITYVDGNMNFNL----VDIQDQETVQLANFKNCFIRGSSVRY 145
>UniRef50_A5DAN5 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 195
Score = 35.9 bits (79), Expect = 1.1
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL----QLE 281
M F L + VT+ELKN + GT+ VD +N LK V N ++ ++
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIRGTLKTVDQYLN--LKLDNVICLNEDKYPHMQSVK 58
Query: 282 TLSIRGNNIRY 314
L IRG+ +RY
Sbjct: 59 NLFIRGSTVRY 69
>UniRef50_Q4YPG0 Cluster: U6 snRNA-associated sm-like protein Lsm2,
putative; n=5; Plasmodium (Vinckeia)|Rep: U6
snRNA-associated sm-like protein Lsm2, putative -
Plasmodium berghei
Length = 125
Score = 35.5 bits (78), Expect = 1.5
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = +3
Query: 147 HEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE----LQLETLSIRGNNIRY 314
++ +TIELKN + G + VD +N +K +++ N E+ L ++T +RG+ +RY
Sbjct: 35 NQHITIELKNDLQISGVLHSVDQYLN--IKLTNISVNNPEKYPHLLSIKTCFVRGSVVRY 92
>UniRef50_Q9Y333 Cluster: U6 snRNA-associated Sm-like protein LSm2;
n=31; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm2 - Homo sapiens (Human)
Length = 95
Score = 35.5 bits (78), Expect = 1.5
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 287
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 288 SIRGNNIRY 314
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>UniRef50_Q9ES84 Cluster: SnRNP core protein SMX5d; n=12;
Eukaryota|Rep: SnRNP core protein SMX5d - Mus musculus
(Mouse)
Length = 119
Score = 35.1 bits (77), Expect = 1.9
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 129 FLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETLSIRGN 302
F L + V +ELKN + GT+ VD +N L + VT K L ++ IRG+
Sbjct: 30 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGS 89
Query: 303 NIRY 314
+RY
Sbjct: 90 VVRY 93
>UniRef50_Q5KJW6 Cluster: Glycine rich protein, putative; n=2;
Dikarya|Rep: Glycine rich protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 117
Score = 35.1 bits (77), Expect = 1.9
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 162 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRYY 317
+ELKNG +G + D MN L+ V T + E +++ + I+GN I+Y+
Sbjct: 17 VELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIKGNIIKYF 69
>UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=2; Pezizomycotina|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 83
Score = 35.1 bits (77), Expect = 1.9
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 129 FLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 308
FL ++ VT++L +G + G + VD MN L+ + + +++ +RGNN+
Sbjct: 17 FLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGNNV 76
Query: 309 RY 314
Y
Sbjct: 77 MY 78
>UniRef50_UPI0000499249 Cluster: U6 snRNA-associated Sm-like protein
LSm4; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U6
snRNA-associated Sm-like protein LSm4 - Entamoeba
histolytica HM-1:IMSS
Length = 81
Score = 34.7 bits (76), Expect = 2.5
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 156 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIRYY 317
VT+ELKNG G + D MN HLK + + + + L ++G +IR +
Sbjct: 16 VTLELKNGFKYTGILDRCDRMMNIHLKNAILIKPSGDRFSVSKLIVKGISIRCF 69
>UniRef50_Q9AW42 Cluster: Putative small nuclear ribonucleoprotein
Sm D3; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein Sm D3 - Guillardia theta (Cryptomonas
phi)
Length = 79
Score = 34.7 bits (76), Expect = 2.5
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +3
Query: 156 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIRYY 317
+TIE KNG + G + ++ MN LK V +K ++ +L + +RG+NI +
Sbjct: 18 ITIECKNGFIYRGKLIHIEENMNCILKEAFV-IKKKKVQKLTLVFLRGSNISMF 70
>UniRef50_P38203 Cluster: U6 snRNA-associated Sm-like protein LSm2;
n=28; Fungi/Metazoa group|Rep: U6 snRNA-associated
Sm-like protein LSm2 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 95
Score = 34.7 bits (76), Expect = 2.5
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT-LKNREEL-QLETL 287
M F L + V +ELKN + GT+ VD +N L + T K L + +
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 288 SIRGNNIRY 314
IRG+ +RY
Sbjct: 61 FIRGSTVRY 69
>UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN;
n=1; Encephalitozoon cuniculi|Rep: U6 snRNA-ASSOCIATED
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 94
Score = 33.9 bits (74), Expect = 4.4
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 156 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNIRY 314
V++ LK G V G + G+D +N L V++ + + SIRG++I+Y
Sbjct: 15 VSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSSHPGLSSISVCSIRGSSIKY 67
>UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 187
Score = 33.9 bits (74), Expect = 4.4
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 162 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE-LQLETLSIRGNNIRY 314
+ELK+G ++G + D MN L+ V T + ++ ++L + +RG+ I+Y
Sbjct: 77 VELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKY 128
>UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 193
Score = 33.9 bits (74), Expect = 4.4
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Frame = +3
Query: 150 EXVTIELKNGSVVHGTITGVDVAMNTHLKAV----KVTLKNREE----LQLETLSIRGNN 305
+ +TIELKNG + G +T VD MN L V L N E L + + +RG
Sbjct: 13 QKITIELKNGETIKGVLTNVDNWMNLTLSDVIQYDSDALNNGAEKPEGLSVPEIYLRGTY 72
Query: 306 IRY 314
I+Y
Sbjct: 73 IKY 75
>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
Methanosarcina acetivorans
Length = 74
Score = 33.5 bits (73), Expect = 5.9
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 132 LMKLSHEXVTIELKNG-SVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 308
+ K+ + +E+K +++ GT+ VD MN HL ++ + L ++ +RGNNI
Sbjct: 7 VQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVRGEKVRSLGSVVLRGNNI 66
>UniRef50_Q9QXA5 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=128; Eukaryota|Rep: U6 snRNA-associated Sm-like
protein LSm4 - Mus musculus (Mouse)
Length = 137
Score = 33.5 bits (73), Expect = 5.9
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 162 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 314
+ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I+Y
Sbjct: 17 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKY 68
>UniRef50_Q9Y4Z0 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=5; Coelomata|Rep: U6 snRNA-associated Sm-like protein
LSm4 - Homo sapiens (Human)
Length = 139
Score = 33.5 bits (73), Expect = 5.9
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 162 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 314
+ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I+Y
Sbjct: 17 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKY 68
>UniRef50_Q54MY6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1374
Score = 33.1 bits (72), Expect = 7.8
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 129 FLMKLSHEXVTIELKNGSVVHGTITGVD 212
FL +LS++ T E+KN S++ GTI +D
Sbjct: 1319 FLSQLSYDQYTQEMKNASIIFGTIINID 1346
>UniRef50_A2FH88 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 94
Score = 33.1 bits (72), Expect = 7.8
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 114 MKLVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQ----LE 281
M + L + +T+ +KNG V+ GT+ +D N +K + K+ L L
Sbjct: 1 MLFLHVFRTLQGKRITVHVKNGIVIEGTLQSIDHFYN--IKLINTETKDAGNLNMVSTLS 58
Query: 282 TLSIRGNNIRY 314
T IRG ++ Y
Sbjct: 59 TAYIRGTSVLY 69
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,336,541
Number of Sequences: 1657284
Number of extensions: 9631918
Number of successful extensions: 18586
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 18170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18581
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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