Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K13
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.003
SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)                   36   0.027

>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +3

Query: 123 VRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 302
           ++ L +     +T+E  NG V  G +   +  MN  +  + VT ++    QLE + +RG+
Sbjct: 7   IKILHEAEGHVITLETLNGEVYRGKLIEAEDNMNCQMSNITVTARDGRVSQLEQVFVRGS 66

Query: 303 NIRY 314
            IR+
Sbjct: 67  KIRF 70


>SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)
          Length = 114

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +3

Query: 120 LVRFLMKLSHEXVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRG 299
           LV  +  +     T+EL+N S + G I  VD  MN  +K VK    + E   L  + + G
Sbjct: 13  LVCLIKAVQGYNTTVELRNESYLEGFIEHVDGFMNIKMKDVKFVKASGEVDNLPAMFVVG 72

Query: 300 NNIRY 314
             IRY
Sbjct: 73  TQIRY 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,204
Number of Sequences: 59808
Number of extensions: 318080
Number of successful extensions: 604
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)