Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K11
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)                   28   3.4  
SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)             27   5.9  
SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_17937| Best HMM Match : TTL (HMM E-Value=4.4e-07)                   27   7.7  
SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)               27   7.7  
SB_10797| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_13256| Best HMM Match : rve (HMM E-Value=1.1e-17)
          Length = 321

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 266 CRSSVGPRCDSDVRFVTFQRLCSK 195
           C SSV PR D+D R +TF+  C K
Sbjct: 294 CTSSVPPRFDND-RQITFKEACKK 316


>SB_39756| Best HMM Match : Ribosomal_S25 (HMM E-Value=2.6)
          Length = 190

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 266 CRSSVGPRCDSDVRFVTFQRLCSK 195
           C SSV PR D+D R +TF   C K
Sbjct: 163 CTSSVPPRFDND-RQITFTEACKK 185


>SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 266 CRSSVGPRCDSDVRFVTFQRLCSK 195
           C SSV PR D+D R +TF   C K
Sbjct: 510 CTSSVPPRFDND-RQITFTEACKK 532


>SB_24526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 FRAEALKRDESHVRVTPWANGRPAH 269
           FR   L   +S VR +PWA  RPA+
Sbjct: 105 FRGPPLFAPKSRVRASPWACTRPAY 129


>SB_17937| Best HMM Match : TTL (HMM E-Value=4.4e-07)
          Length = 491

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 341 CMLVNYSFFTLEQLSGGTSDLVLFMCRSSVGPRCDSDVRFVTF 213
           C ++NY    L+Q++    D  +   R  VGP    DVR++ F
Sbjct: 222 CTVMNYGTHKLKQITSKYIDKQVLFHRDDVGP-VKFDVRYMLF 263


>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
          Length = 440

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -3

Query: 397 LNSIIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVPLT 281
           L  +I+ T+++    D+ +  +L+IP  +W + + +  T
Sbjct: 333 LGVVIFATVIYYCEKDELNTSFLSIPDGMWYAIVTMTTT 371


>SB_10797| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 754

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 187 SKNFEQRR*NVTNLTSES-HLGPTDDLHMKRTKSEVPPES 303
           SK+ ++R   + NL S + H+G ++    KRT + +PP+S
Sbjct: 424 SKDVKRRSDQLVNLASSARHVGISEWFARKRTLAGLPPQS 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,737,453
Number of Sequences: 59808
Number of extensions: 213927
Number of successful extensions: 475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)