Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K11
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondri...    64   6e-11
At2g46890.1 68415.m05856 expressed protein                             28   3.6  
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ...    27   6.3  
At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi...    27   6.3  
At3g14710.1 68416.m01860 F-box family protein   ; similar to SKP...    27   6.3  
At2g44440.1 68415.m05526 emsy N terminus domain-containing prote...    27   6.3  

>At1g51650.1 68414.m05819 ATP synthase epsilon chain, mitochondrial
           identical to ATP synthase epsilon chain, mitochondrial
           SP:Q96253 from [Arabidopsis thaliana]
          Length = 70

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 25/49 (51%), Positives = 37/49 (75%)
 Frame = +3

Query: 117 WRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKRDESHVRVTPWANGRP 263
           WR AG+TYI+YSNI A ++R  LK+  +AEAL R++ H  ++ WA+G+P
Sbjct: 10  WRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58


>At2g46890.1 68415.m05856 expressed protein
          Length = 322

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 168 VLRRSLKQEFRAEALKRDESHVRV-TPWANGRPAHEKD 278
           V RR +KQ++RAEA +  +    V  PW     A  KD
Sbjct: 282 VERRMVKQQYRAEAYRAYQKTTSVWIPWFKSHAAATKD 319


>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
           finger domain-containing protein-related contains Pfam
           profiles PF03468: XS domain, weak hit to PF03470: XS
           zinc finger domain
          Length = 625

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 104 QNERLEASWFNLHKLLKH-RSQGASQV 181
           QN      W+NLH LL H R++GA +V
Sbjct: 232 QNGPGAIDWYNLHPLLAHARTKGARRV 258


>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 834

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 51  NQENFNLFLRIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALKR 218
           N+E  NLFL +++++        R    T+ N    A  +    L QEF  + LKR
Sbjct: 536 NEEALNLFLELQLSRE-------RPDEFTFANMVTAAGNLASVQLGQEFHCQLLKR 584


>At3g14710.1 68416.m01860 F-box family protein   ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 442

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 216 VSTPLLEILALVTCEAPWLRCLSSLCKLNQLASK 115
           + +PLL I  +  C +  +   S +CK+  LASK
Sbjct: 219 IDSPLLRIFEMFKCTSEHVPNPSQVCKIRVLASK 252


>At2g44440.1 68415.m05526 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 429

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +3

Query: 51  NQENFNLFLRIKVNKNINKMSAWRQAGLTYINYSNIAAKVLRRSLKQEFRAEALK--RDE 224
           N+E+  L  R+  +  I ++  WRQ+G    +  N AA+V+  +L     + ++K  +  
Sbjct: 102 NEEHRELLGRVNSDDTIRRIREWRQSGGMQPSMRN-AAQVVHDTLPSPSVSASMKTHKPN 160

Query: 225 SHVRVTPWANGRPA 266
             +   P+A+  P+
Sbjct: 161 QPIPSQPFASSSPS 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,273,180
Number of Sequences: 28952
Number of extensions: 151578
Number of successful extensions: 341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)