Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K09
         (729 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    24   1.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.8  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   5.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   5.8  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 254 EFPNTCQRDAYGVLLTKK 307
           +F  TC RD Y +L T K
Sbjct: 419 DFKGTCGRDKYDILRTAK 436


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 675 RHHRPW*LGHYHHF 716
           RHH     GH HHF
Sbjct: 117 RHHEEVADGHQHHF 130


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 675 RHHRPW*LGHYHHF 716
           RHH     GH HHF
Sbjct: 117 RHHEEVADGHQHHF 130


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 675 RHHRPW*LGHYHHF 716
           RHH     GH HHF
Sbjct: 117 RHHEEVADGHQHHF 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,293
Number of Sequences: 336
Number of extensions: 3572
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)