Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_K09
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 98 5e-21
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 96 3e-20
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 95 7e-20
03_05_0830 + 28034179-28035492 29 3.8
08_02_0881 - 22216657-22216780,22216918-22217056,22217120-222171... 29 5.0
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 28 6.6
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 28 8.7
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 98.3 bits (234), Expect = 5e-21
Identities = 41/54 (75%), Positives = 46/54 (85%)
Frame = +1
Query: 559 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 720
RKSEIEYYA+L K VHH+ GNN++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 97 RKSEIEYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/55 (61%), Positives = 41/55 (74%)
Frame = +2
Query: 71 VAAKKQXKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 235
V A Q K+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLR
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLR 97
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 95.9 bits (228), Expect = 3e-20
Identities = 39/55 (70%), Positives = 47/55 (85%)
Frame = +1
Query: 559 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 723
RKSEIEYYA+L K V+H++GNN++LGTACGKYYRVC L++ DPGDSDI LPE
Sbjct: 174 RKSEIEYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPE 228
Score = 71.3 bits (167), Expect = 7e-13
Identities = 38/70 (54%), Positives = 43/70 (61%)
Frame = +2
Query: 26 LCSW*GFISIXAPKMVAAKKQXKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLV 205
+ +W G I PK K E IN++L LVMKSGKY LGYK LKTLR K KLV
Sbjct: 113 ITNWAGLIRKVGPK--------KNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLV 164
Query: 206 IIAKNAPPLR 235
I+A N PPLR
Sbjct: 165 IVANNCPPLR 174
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 94.7 bits (225), Expect = 7e-20
Identities = 40/52 (76%), Positives = 46/52 (88%)
Frame = +1
Query: 559 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 714
RKSEIEYYA+LAK VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 56 RKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107
Score = 80.2 bits (189), Expect = 2e-15
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = +2
Query: 68 MVAAKKQXKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 235
MVAAKK K+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLR
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLR 56
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 137 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 220
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>08_02_0881 -
22216657-22216780,22216918-22217056,22217120-22217192,
22218260-22218357,22218516-22218542,22218625-22218715,
22218819-22218900,22219983-22220098
Length = 249
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 517 EPME*SLNSILHFGRKSEIEYYALLAKTGVHHYSGNNI 630
E M+ L +LH S+++YY G+H+ NN+
Sbjct: 119 EYMDHDLKKVLHHSTPSQVKYYMEQLLKGLHYCHVNNV 156
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 455 IINSIKLHSFLNTVLLDHNVGNLWSSL*TRYF 550
I++ I +H L T+ D +V N W + YF
Sbjct: 790 ILDCIDVHKLLETIFGDQDVANSWKARCAEYF 821
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 71 VAAKKQXKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 226
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,666,683
Number of Sequences: 37544
Number of extensions: 349161
Number of successful extensions: 666
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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