Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K08
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    94   1e-20
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    26   3.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.6  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   7.6  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 48/143 (33%), Positives = 76/143 (53%)
 Frame = +3

Query: 105 VLSLQIGNNTVEAFENGYFMXPNLQVEYVCEXLAADPKLSNGFNVMGFSQGCQFIRAVVQ 284
           V ++++G+N  E  + GY      Q++ VC+ +  +  LSNGF  +G SQG  F+RA+ Q
Sbjct: 58  VYAIRVGDNEFEDIKAGYLGKLEDQLDEVCDLIGNEDSLSNGFYALGLSQGGLFLRALAQ 117

Query: 285 RCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQAT 464
            C     +I+++++LG  H GI  IP C          V  +L    ++SW+QN +VQA 
Sbjct: 118 TC--DAAKIRSLITLGSPHSGINTIPGCSPTNLICKAVVHSILGLGIWHSWIQNHVVQAQ 175

Query: 465 YWHDPLXERTYEANSVFLADINN 533
           Y+        Y  N+ FL  +NN
Sbjct: 176 YYRTEKQYDKYLENNKFLTHLNN 198


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 390 CDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSVFLADINNVRTVNXTY 557
           C   RK+++    N  + +S V A Y+ DP+ E   +  S F  + N++ T   T+
Sbjct: 211 CTVPRKIVHVLQKNKNLISSAVNAFYYRDPIDENYCDRMSKF--NQNDLVTTTITF 264


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 432 CYMQRN*VASSHHHMFRVSRHHNEVCHRCLGADLRETPC 316
           C+   N   S  +H F     H   C RCL A   E PC
Sbjct: 585 CFRPCNKKLSCGNH-FCQHMCHRGPCPRCLEASFEELPC 622


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 286  DVVINYHKLKTWCL 327
            ++  NYH LK WCL
Sbjct: 1342 NISYNYHVLKDWCL 1355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,460
Number of Sequences: 5004
Number of extensions: 44746
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)