Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K08
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856...    66   1e-11
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984...    56   1e-08
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609...    28   4.4  
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533...    27   7.7  

>03_01_0008 +
           84955-85048,85165-85225,85375-85426,85554-85661,
           85662-85715,86140-86190,86348-86410,87048-87113,
           87190-87228,87493-87615,88251-88343,88437-88661
          Length = 342

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 39/106 (36%), Positives = 53/106 (50%)
 Frame = +3

Query: 216 KLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCD 395
           +LSNG+N++G SQG    RAVV+ C    P +KN +SLGG H G   +P CG+     C 
Sbjct: 111 ELSNGYNIVGLSQGNLIGRAVVEFCDDG-PPVKNFISLGGPHAGTASVPLCGS--GIFCI 167

Query: 396 DVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSVFLADINN 533
               L+    Y+ +VQ  L  + Y   P     Y     FL  +NN
Sbjct: 168 LADSLIKMEIYSDYVQAHLAPSGYMKIPTDISDYLKGCRFLPKLNN 213


>10_08_0939 +
           21696941-21697049,21697171-21697255,21698385-21698457,
           21698553-21698609,21698660-21698713,21699196-21699246,
           21699441-21699503,21700453-21700518,21700625-21700663,
           21702190-21702271,21703479-21703536,21703698-21703914,
           21704248-21704697
          Length = 467

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 33/103 (32%), Positives = 53/103 (51%)
 Frame = +3

Query: 171 NLQVEYVCEXLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGI 350
           NL   Y+C  +    +L  G++++G SQG    RAV++ C    P +KN +S+GG H G 
Sbjct: 100 NLHHFYLCT-VKKMKELRKGYSIVGLSQGNLIGRAVIEYCDGG-PPVKNFISIGGPHAGT 157

Query: 351 YGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDP 479
             +P CG+     C  +  L+    Y+++VQ  L  + Y   P
Sbjct: 158 ASVPLCGS--GIVCVLIDALIKLEIYSNYVQAHLAPSGYLKIP 198


>04_03_0858 +
           20357519-20357573,20358072-20358119,20360675-20360922,
           20361152-20361363,20361480-20361741,20361832-20362143
          Length = 378

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 25/106 (23%), Positives = 48/106 (45%)
 Frame = +3

Query: 195 EXLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGA 374
           E LA + +L   F +MGFS G + + + ++   H+L  +  +  +G       G+P    
Sbjct: 154 EELADNLQLGPKFYLMGFSMGGEIMWSCLKHISHRLAGVAILAPVGNYWWS--GLP---- 207

Query: 375 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSV 512
             + +     + L    +  WV + L   TYW +   ++ + A+SV
Sbjct: 208 -SNMSWHVWNQQLPQDKWAVWVSHHLPWLTYWWN--SQKLFPASSV 250


>04_03_0857 +
           20352331-20352582,20352740-20352951,20353047-20353308,
           20353418-20353726
          Length = 344

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 25/106 (23%), Positives = 48/106 (45%)
 Frame = +3

Query: 195 EXLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGA 374
           E LA + +L   F +MGFS G + + + ++   H+L  +  +  +G       G+P    
Sbjct: 121 EELADNLQLGPKFYLMGFSMGGEIMWSCLKHISHRLAGVAILGPVGNYWWS--GLP---- 174

Query: 375 LRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSV 512
             + +     + L    +  WV + L   TYW +   ++ + A+SV
Sbjct: 175 -SNVSWHAWNQQLPQDKWAVWVSHHLPWLTYWWN--SQKLFPASSV 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,500,641
Number of Sequences: 37544
Number of extensions: 283217
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)