Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K08
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54718| Best HMM Match : Palm_thioest (HMM E-Value=1.8e-07)          88   4e-18
SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_30727| Best HMM Match : DUF658 (HMM E-Value=0.39)                   28   4.5  
SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)                        28   6.0  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              27   7.9  

>SB_54718| Best HMM Match : Palm_thioest (HMM E-Value=1.8e-07)
          Length = 144

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 40/72 (55%), Positives = 48/72 (66%)
 Frame = +3

Query: 315 NMVSLGGQHQGIYGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERT 494
           N++S GGQHQG+YG PHC       C+ VR+LLN  AY      SLVQA YWHDP+ E+ 
Sbjct: 3   NLISFGGQHQGVYGFPHCPGDNSTLCNYVRELLNIGAY-----VSLVQAEYWHDPMNEKE 57

Query: 495 YEANSVFLADIN 530
           Y   S+FLADIN
Sbjct: 58  YRDKSIFLADIN 69


>SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 255 GCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETC 392
           GC+ +  ++Q  G+KL ++    +  G  +  Y    C ALRHE C
Sbjct: 669 GCKEVLTLLQNFGNKLTKLDLTFNSIGDEEAKY---ICEALRHENC 711


>SB_30727| Best HMM Match : DUF658 (HMM E-Value=0.39)
          Length = 381

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +1

Query: 169 RISKLNMYVXS*RPIQNYQTDSMSWVSHRDVSLFEL*YKDV--VINY-HKLKTWCLSEVS 339
           RIS++     + R    ++  S+   S RDV+++ L  KDV  VI++ +KL+ +  ++  
Sbjct: 203 RISQIGTAQFTSRDEAQHRIASLRERSERDVTMYNLAIKDVLRVIDHDNKLREFMSTKAE 262

Query: 340 TKASMAY 360
            +AS+ Y
Sbjct: 263 DRASLLY 269


>SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)
          Length = 158

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 411 VASSHHHMFRVSRHHNEVCHRCLGADLR 328
           + SSHHH      H +  CH+ +   +R
Sbjct: 108 ITSSHHHHHHHHHHQHRGCHKAVAGHVR 135


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 251 TGMSVYSSCSTKMWS*TTTN*KH----GVSRRSAPRHLWHTSL 367
           T    Y S ST+++  TTT  +H     + R S PRHL+H  L
Sbjct: 822 TPRHAYDSYSTRIY--TTTRVRHVNTTAIPRVSTPRHLFHAYL 862


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,448,926
Number of Sequences: 59808
Number of extensions: 350638
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)