Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K08
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47340.1 68418.m05835 palmitoyl protein thioesterase family p...    79   3e-15
At5g47330.1 68418.m05834 palmitoyl protein thioesterase family p...    71   4e-13
At4g17483.1 68417.m02615 palmitoyl protein thioesterase family p...    71   4e-13
At3g60340.2 68416.m06746 palmitoyl protein thioesterase family p...    69   2e-12
At3g60340.1 68416.m06745 palmitoyl protein thioesterase family p...    69   2e-12
At4g17480.1 68417.m02614 palmitoyl protein thioesterase family p...    67   7e-12
At4g17470.1 68417.m02613 palmitoyl protein thioesterase family p...    66   2e-11
At5g47350.1 68418.m05836 palmitoyl protein thioesterase family p...    60   1e-09
At2g20380.1 68415.m02379 kelch repeat-containing F-box family pr...    31   0.53 
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin...    29   2.8  
At1g08760.1 68414.m00975 expressed protein similar to At1g21030,...    28   3.7  

>At5g47340.1 68418.m05835 palmitoyl protein thioesterase family
           protein 
          Length = 317

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 3/176 (1%)
 Frame = +3

Query: 15  FILCFG-ATCCMSFXLGSFKIFLAQHIPGVXVLSLQIGNNTVEAFENGYFMXPNLQVEYV 191
           FI+  G A+ C      +F   L  ++ G     L+IGN  +    N  F+    Q E  
Sbjct: 28  FIMLHGIASQCSDDTNANFTQLLT-NLSGSPGFCLEIGNGVI----NSMFLPLTQQAEIA 82

Query: 192 CEXLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPH-- 365
           CE +    +LS G+N++G SQG    R +++ C    P + N +SL G H GI  +P   
Sbjct: 83  CENVKEMKELSQGYNIVGRSQGNLVARGLIEFCDGG-PPVFNYISLAGPHAGISSLPRGL 141

Query: 366 CGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSVFLADINN 533
           CG      C    +L+  A Y+  +Q+ L  + Y+  P   + Y   S +L  +NN
Sbjct: 142 CGLTSDPACKKFNELIKGALYSETIQDHLAPSGYYKIPNDMKQYLERSKYLPKLNN 197


>At5g47330.1 68418.m05834 palmitoyl protein thioesterase family
           protein 
          Length = 314

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 1/174 (0%)
 Frame = +3

Query: 15  FILCFGATC-CMSFXLGSFKIFLAQHIPGVXVLSLQIGNNTVEAFENGYFMXPNLQVEYV 191
           FI+  G +  C +    +F   L  ++ G     L+IGN   ++    + M    Q E  
Sbjct: 29  FIMLHGISAQCSNARDANFTQLLT-NLSGSPGFCLEIGNGVADS----WLMPLTRQAEIA 83

Query: 192 CEXLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCG 371
           CE +    +LS G+N++G SQG    R +++ C    P + N +SL G H GI  +P CG
Sbjct: 84  CEKVKQMKELSQGYNIVGRSQGNLVARGLIEFCDGG-PPVYNYISLAGPHAGISSVPMCG 142

Query: 372 ALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSVFLADINN 533
           +     C    +L+    Y+ ++Q+ L  + Y   P     Y  +S +L  +NN
Sbjct: 143 S--GLFCKLADELIKGDIYSDFIQDHLAPSGYLKIPTDMTKYLGSSKYLPKLNN 194


>At4g17483.1 68417.m02615 palmitoyl protein thioesterase family
           protein
          Length = 300

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 53/177 (29%), Positives = 80/177 (45%)
 Frame = +3

Query: 9   LSFILCFGATCCMSFXLGSFKIFLAQHIPGVXVLSLQIGNNTVEAFENGYFMXPNLQVEY 188
           + FIL  G     S  + +F   L  ++ G     L+IGN      ++ +FM    Q   
Sbjct: 29  IPFILFHGIGDKCSGGVSNFTQLLT-NLSGSPGYCLEIGNGE----KDSWFMPLRKQTSV 83

Query: 189 VCEXLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHC 368
            CE + A   LS G+N++  SQG    R +++ C +  P + N +SLGG H GI  IP C
Sbjct: 84  ACEKVKAMKVLSQGYNIVAESQGNLVARGLIEFCDN-APPVINYISLGGPHAGIAKIPKC 142

Query: 369 GALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSVFLADINNVR 539
            +     C     LL    Y  +VQ+ +  + Y   P     Y  +S +L  +NN R
Sbjct: 143 NS--GPICAIGEALLKLEVYTDFVQDHIAPSGYIKIPGEISKYLEHSKYLPKLNNER 197


>At3g60340.2 68416.m06746 palmitoyl protein thioesterase family
           protein palmitoyl-protein thioesterase precursor, Mus
           musculus, EMBL:AF071025
          Length = 338

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
 Frame = +3

Query: 177 QVEYVCEXLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYG 356
           Q   VCE + + P+LS+G++++G SQG    RA+++ C    P +K+ VS+ G H G   
Sbjct: 75  QTSVVCEKVKSMPELSDGYSIVGLSQGNMIGRALIEFC-DGAPPVKSFVSVAGPHAGTAS 133

Query: 357 IPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSVFLADINNV 536
           IP CGA     C  +  ++    Y+ ++Q  L  + +   P     Y     FL  +NN 
Sbjct: 134 IPFCGAT--WICIMLDSMIKAEIYSDYMQEHLAPSGFLKIPTDIAGYMEGCRFLPKLNNE 191

Query: 537 RTV-NXTY 557
             V N TY
Sbjct: 192 LPVKNSTY 199


>At3g60340.1 68416.m06745 palmitoyl protein thioesterase family
           protein palmitoyl-protein thioesterase precursor, Mus
           musculus, EMBL:AF071025
          Length = 338

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
 Frame = +3

Query: 177 QVEYVCEXLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYG 356
           Q   VCE + + P+LS+G++++G SQG    RA+++ C    P +K+ VS+ G H G   
Sbjct: 75  QTSVVCEKVKSMPELSDGYSIVGLSQGNMIGRALIEFC-DGAPPVKSFVSVAGPHAGTAS 133

Query: 357 IPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSVFLADINNV 536
           IP CGA     C  +  ++    Y+ ++Q  L  + +   P     Y     FL  +NN 
Sbjct: 134 IPFCGAT--WICIMLDSMIKAEIYSDYMQEHLAPSGFLKIPTDIAGYMEGCRFLPKLNNE 191

Query: 537 RTV-NXTY 557
             V N TY
Sbjct: 192 LPVKNSTY 199


>At4g17480.1 68417.m02614 palmitoyl protein thioesterase family
           protein
          Length = 304

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 1/176 (0%)
 Frame = +3

Query: 15  FILCFGATC-CMSFXLGSFKIFLAQHIPGVXVLSLQIGNNTVEAFENGYFMXPNLQVEYV 191
           FIL  G    C +  + SF + L  ++       L+IGN      ++   M    Q    
Sbjct: 28  FILFHGIRDQCSNGGVSSF-VQLLSNLSSSHGSCLEIGNGE----QDSVTMPLTQQASVA 82

Query: 192 CEXLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCG 371
           CE +     LS G+N++  SQG    R +++ C +  P + N +SLGG H GI  IP C 
Sbjct: 83  CEKVKQMKDLSQGYNIVAQSQGNLVARGLIEFCDNA-PPVFNYISLGGPHAGISDIPKCN 141

Query: 372 ALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSVFLADINNVR 539
           +     C+    LL  A Y  +VQ+ +  + Y   P   + Y  +S +L  INN R
Sbjct: 142 S---TLCE----LLKTAVYTDFVQDHIAPSGYIKIPTDIKDYLEHSKYLPKINNER 190


>At4g17470.1 68417.m02613 palmitoyl protein thioesterase family
           protein
          Length = 308

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 4/170 (2%)
 Frame = +3

Query: 42  CMSFXLGSFKIFLAQHIPGVXVLSLQIGNNTVEAFENGYFMXPNLQVEYVCEXLAADPKL 221
           C +  + +   FL  H  G     ++IG+   ++     FM    Q    CE +   P+L
Sbjct: 39  CSNDKVSNLTQFLINH-SGYPGTCVEIGDGVKDSL----FMPLRQQASIACEKIKQMPEL 93

Query: 222 SNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCDDV 401
           S G+N++  SQG    R +++ C +  P + N VSLGG H G+  IP       E CD  
Sbjct: 94  SEGYNIVAESQGNLVARGLIEFCDN-APPVINYVSLGGPHAGVAAIP-------EGCDSA 145

Query: 402 RKLLNYA----AYNSWVQNSLVQATYWHDPLXERTYEANSVFLADINNVR 539
             +L  A     Y+ + Q+    + Y   P+  + Y  +S +L  +NN R
Sbjct: 146 FCILMKAFFAVIYSDFAQDHTAPSGYVKKPMEIKNYLEHSKYLPKLNNER 195


>At5g47350.1 68418.m05836 palmitoyl protein thioesterase family
           protein
          Length = 316

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
 Frame = +3

Query: 177 QVEYVCEXLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYG 356
           Q E  C+ +    +LS G+N++G +QG    R +++ C    P + N +SL G H G   
Sbjct: 80  QAEVACDKVTQMEELSQGYNIVGRAQGSLVARGLIEFC-EGGPPVHNYISLAGPHAGTAD 138

Query: 357 IPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSVFLADINNV 536
           +  C       CD    +     Y+ +VQ++L  + Y+ +P     Y  +  +L  +NN 
Sbjct: 139 LLRCNT-SGLICDIANGIGKENPYSDFVQDNLAPSGYFKNPKNVTGYLKDCQYLPKLNNE 197

Query: 537 RTV--NXTY 557
           R    N TY
Sbjct: 198 RPYERNTTY 206


>At2g20380.1 68415.m02379 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 348

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 69  KIFLAQHIPGVXVLSL-QIGNNTVEAFENGYFMXPNLQVEYVCEXLAADPKLSNGFNVMG 245
           +IF  QH+ G+  + + ++ +   +  E    + P L+     E +A  PK+S G+ V+G
Sbjct: 164 RIFKLQHMKGMLYMKVSKLLSFVAQDAEELAPLFPKLRSLLSTEVVAFKPKVSEGYEVLG 223

Query: 246 FS 251
           FS
Sbjct: 224 FS 225


>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
           protein-related contains Pfam profiles PF03107: DC1
           domain, weak hit to PF00628: PHD-finger
          Length = 513

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 216 KLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCD 395
           ++S+G  ++ FS GCQ      +  G +  +      L    + +Y    CG + HETC 
Sbjct: 223 RISDGI-ILHFSHGCQLKLTTYEVNGEE--KFCQACVLPINEKNLYVCVECGFILHETCA 279

Query: 396 D 398
           D
Sbjct: 280 D 280


>At1g08760.1 68414.m00975 expressed protein similar to At1g21030,
           At5g44890, At2g29240, At1g08740; similar to EST
           gb|N96641
          Length = 748

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +3

Query: 108 LSLQIGNNTVEAFENGYFMXPNLQVEY---VCEXLAADPKL-SNGFNVMGFSQ-GCQFIR 272
           L    G+ ++ +     +  PN   ++   + +     PKL   G   MG S+ G   ++
Sbjct: 210 LKTSSGSKSIPSSPTSCYSLPNSFAKFANGIKQQQTVKPKLLEKGSPRMGLSEKGRSLLK 269

Query: 273 AVVQRCGHKLPQIKNMV 323
           A   + G KLP IKN V
Sbjct: 270 AESPKVGKKLPMIKNFV 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,838,279
Number of Sequences: 28952
Number of extensions: 235802
Number of successful extensions: 587
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)