Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K07
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   2.6  
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb...    25   3.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   5.9  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    24   7.8  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    24   7.8  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    24   7.8  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 200  SPAAVPITYSALPSATYYVR*NKIISR 280
            SP A+P+TYS    A++    NK++S+
Sbjct: 1109 SPLALPMTYSPTERASFLSYKNKVMSQ 1135


>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 161 TPGLVPPVISPYASPAAVPITYSALPSA 244
           TP +   V + +++PA+ P+T ++ PS+
Sbjct: 74  TPTMAEQVQTSFSNPASTPLTQTSSPSS 101


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 134  PYTGLDYVYTPGLVPPVISPYASPAAVPITYSALP 238
            P  G+  V  P   PPV +P A    VP+  +  P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 21  YSKQTTCPTNSSFSSLCW-PCLWPLQALRQPQNQHRNFFHTQAW 149
           + +  +  TN       W P  +  +  R P N  R++F T AW
Sbjct: 119 FKESRSSKTNPKRDWYFWKPARYNEKGERLPPNNWRSYFDTSAW 162


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 143 GLDYVYTPGLVPPVISPYASPAAVPITYSALPSAT--YYVR*NKII 274
           G  Y   PG + PV+S    P  + +   A P     Y +R +++I
Sbjct: 178 GYSYAPVPGKLSPVVSVQIHPKDLGVILIAYPDGVVLYSIRTDEVI 223


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
 Frame = -1

Query: 169 AGCIDVVQ---ACVWKKLRCWFWGCLRA---WSG 86
           AGC D +    + VW + +   WGC++A   W+G
Sbjct: 482 AGCNDFLTKPVSLVWLEKKITEWGCMQALIDWNG 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,432
Number of Sequences: 5004
Number of extensions: 22428
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)