Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K07
         (406 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26250.1 68414.m03202 proline-rich extensin, putative similar...    29   1.6  
At4g08380.1 68417.m01384 proline-rich extensin-like family prote...    28   2.1  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    28   2.7  
At5g57030.1 68418.m07118 lycopene epsilon cyclase identical to l...    27   4.8  
At4g33290.1 68417.m04736 F-box family protein contains Pfam PF00...    26   8.3  
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    26   8.3  

>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
           extensin gi|1165322|gb|AAB53156; contains proline-rich
           extensin domains, INTERPRO:IPR002965
          Length = 443

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 152 YVYTPGLVPPVISPYASPAAVPITYSALPSATY 250
           YVY+P   PP +  Y SP   P  YS+ P   Y
Sbjct: 165 YVYSPPPPPPYV--YQSPPPPPYVYSSPPPPPY 195



 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 152 YVYTPGLVPPVISPYASPAAVPITYSALPSATY 250
           YVY+    PP +  Y+SP   P  YS+ P   Y
Sbjct: 285 YVYSSPPPPPYV--YSSPPPPPYVYSSPPPPPY 315


>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 437

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 137 YTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSATYY 253
           +T   Y Y+P   PP +  Y+SP   P TYS  PS   Y
Sbjct: 23  HTSAQYPYSPPSPPPYV--YSSPP--PYTYSPPPSPYVY 57


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 158 YTPGLVPPVISPYASPAAVPITYSALPSATYY 253
           Y+P   PPV+  Y+SP   P+ YS+ P    Y
Sbjct: 627 YSPPPPPPVVH-YSSPPPPPVYYSSPPPPPVY 657


>At5g57030.1 68418.m07118 lycopene epsilon cyclase identical to
           lycopene epsilon cyclase [GI:1399181]
          Length = 524

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 27  KQTTCPTNSSFSSLCWPCLWPLQALRQ 107
           ++TT   NS+ S   W  LWP +  RQ
Sbjct: 412 EETTKQINSNISRQAWDTLWPPERKRQ 438


>At4g33290.1 68417.m04736 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 430

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 112 WGCLRAWS--GQRHGQQSEENEEFVGHVVCFE 23
           W C++  S  G  +    EEN +   H++CF+
Sbjct: 202 WSCVQGVSLKGNTYWCAREENSDGYNHIICFD 233


>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 164 PGLVPPVISPYASPAAVPITYSALP 238
           PGL+PP+I+P   P  VP   S  P
Sbjct: 171 PGLLPPIINP--PPVTVPPPSSGYP 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,880,355
Number of Sequences: 28952
Number of extensions: 117974
Number of successful extensions: 444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)