Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K06
         (500 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.               128   8e-30
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...   128   8e-30
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...   128   8e-30
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...   128   8e-30
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...   128   8e-30
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    64   3e-10

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score =  128 bits (310), Expect = 8e-30
 Identities = 69/107 (64%), Positives = 82/107 (76%)
 Frame = +3

Query: 54  LXFAIAVGLLKGHKTTXISAGRKGLTXKAIXIRPARLKGLQTKHSKFVRDLVREVVGHAQ 233
           L + +AVGL KGHK T      K ++      R +R +G  TKH+KFVRD++REV G A 
Sbjct: 3   LRYPMAVGLNKGHKVT------KNVSKP----RHSRRRGRLTKHTKFVRDMIREVCGFAP 52

Query: 234 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 374
           YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 53  YERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  128 bits (310), Expect = 8e-30
 Identities = 69/107 (64%), Positives = 82/107 (76%)
 Frame = +3

Query: 54  LXFAIAVGLLKGHKTTXISAGRKGLTXKAIXIRPARLKGLQTKHSKFVRDLVREVVGHAQ 233
           L + +AVGL KGHK T      K ++      R +R +G  TKH+KFVRD++REV G A 
Sbjct: 3   LRYPMAVGLNKGHKVT------KNVSKP----RHSRRRGRLTKHTKFVRDMIREVCGFAP 52

Query: 234 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 374
           YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 53  YERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  128 bits (310), Expect = 8e-30
 Identities = 69/107 (64%), Positives = 82/107 (76%)
 Frame = +3

Query: 54  LXFAIAVGLLKGHKTTXISAGRKGLTXKAIXIRPARLKGLQTKHSKFVRDLVREVVGHAQ 233
           L + +AVGL KGHK T      K ++      R +R +G  TKH+KFVRD++REV G A 
Sbjct: 3   LRYPMAVGLNKGHKVT------KNVSKP----RHSRRRGRLTKHTKFVRDMIREVCGFAP 52

Query: 234 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 374
           YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 53  YERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  128 bits (310), Expect = 8e-30
 Identities = 69/107 (64%), Positives = 82/107 (76%)
 Frame = +3

Query: 54  LXFAIAVGLLKGHKTTXISAGRKGLTXKAIXIRPARLKGLQTKHSKFVRDLVREVVGHAQ 233
           L + +AVGL KGHK T      K ++      R +R +G  TKH+KFVRD++REV G A 
Sbjct: 3   LRYPMAVGLNKGHKVT------KNVSKP----RHSRRRGRLTKHTKFVRDMIREVCGFAP 52

Query: 234 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 374
           YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 53  YERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  128 bits (310), Expect = 8e-30
 Identities = 69/107 (64%), Positives = 82/107 (76%)
 Frame = +3

Query: 54  LXFAIAVGLLKGHKTTXISAGRKGLTXKAIXIRPARLKGLQTKHSKFVRDLVREVVGHAQ 233
           L + +AVGL KGHK T      K ++      R +R +G  TKH+KFVRD++REV G A 
Sbjct: 3   LRYPMAVGLNKGHKVT------KNVSKP----RHSRRRGRLTKHTKFVRDMIREVCGFAP 52

Query: 234 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 374
           YE+RAMELLKVSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 53  YERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 63.7 bits (148), Expect = 3e-10
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = +3

Query: 258 LKVSKDKRALKFLKRRLGTHIRAKRKREELSN 353
           LKVSKDKRALKF+K+R+GTHIRAKRKREELSN
Sbjct: 1   LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,320,977
Number of Sequences: 237096
Number of extensions: 945765
Number of successful extensions: 2044
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)