Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_K06
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    99   1e-21
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            98   3e-21
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    97   4e-21
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    76   2e-14
At5g60070.1 68418.m07532 ankyrin repeat family protein contains ...    27   9.4  

>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 48/82 (58%), Positives = 61/82 (74%)
 Frame = +3

Query: 126 LTXKAIXIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRR 305
           +T + +  RP   KG  +K + F+R+L++EV G A YEKR  ELLKV KDKRALK  KR+
Sbjct: 20  VTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRK 79

Query: 306 LGTHIRAKRKREELSNVLAQMR 371
           LGTH RAKRKREE+S+VL +MR
Sbjct: 80  LGTHKRAKRKREEMSSVLRKMR 101


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 49/82 (59%), Positives = 60/82 (73%)
 Frame = +3

Query: 126 LTXKAIXIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRR 305
           +T + +  RP   KG  +K + F+R L+REV G A YEKR  ELLKV KDKRALK  KR+
Sbjct: 20  VTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRK 79

Query: 306 LGTHIRAKRKREELSNVLAQMR 371
           LGTH RAKRKREE+S+VL +MR
Sbjct: 80  LGTHKRAKRKREEMSSVLRKMR 101


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 97.5 bits (232), Expect = 4e-21
 Identities = 47/74 (63%), Positives = 57/74 (77%)
 Frame = +3

Query: 150 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 329
           RP   KG  +K + F+R+L++EV G A YEKR  ELLKV KDKRALK  KR+LGTH RAK
Sbjct: 24  RPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 83

Query: 330 RKREELSNVLAQMR 371
           RKREE+S+VL +MR
Sbjct: 84  RKREEMSSVLRKMR 97


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 41/82 (50%), Positives = 55/82 (67%)
 Frame = +3

Query: 126 LTXKAIXIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRR 305
           +T + +  RP   KG  +K + F+R+L++EV G A YEKR  ELLKV+         KR+
Sbjct: 20  VTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVA---------KRK 70

Query: 306 LGTHIRAKRKREELSNVLAQMR 371
           LGTH RAKRKREE+S+VL +MR
Sbjct: 71  LGTHKRAKRKREEMSSVLRKMR 92


>At5g60070.1 68418.m07532 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 548

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 66  IAVGLLKGHKTTXISAGRKGLTXKAIXIRPARLK 167
           + V L+KGH+++   A  KG T   +  R  R+K
Sbjct: 226 VVVELMKGHRSSLNMADSKGNTALHVATRKGRIK 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,073,744
Number of Sequences: 28952
Number of extensions: 138695
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)